View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_low_21 (Length: 250)
Name: NF3249_low_21
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 2203823 - 2203665
Alignment:
| Q |
12 |
agctatatggagtcagatcctttcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgct |
111 |
Q |
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| T |
2203823 |
agctatatggagtcagatcctgtgaaaattgctgtggaaggtgtggaaagattcaagaaagaaaactgtgatcttataattgttgatactagtgggcggc |
2203724 |
T |
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| Q |
112 |
acaaacaagaagctgccctatttgaagaaatgcgtcaactttcagaagcaacggtattt |
170 |
Q |
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| T |
2203723 |
acaaacaagaagctgctctttttgaagaaatgcgtcaagtttcagaagcaacggtattt |
2203665 |
T |
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Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 44826288 - 44826444
Alignment:
| Q |
12 |
agctatatggagtcagatcctttcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgct |
111 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || || ||||||||||||||||||||||||||| || |
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| T |
44826288 |
agctatatggagtcagatcctgtcaaaattgctgtggaaggtgtggaaagattcaaggaagaagaccatgatcttataattgttgataccagtgggcggc |
44826387 |
T |
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| Q |
112 |
acaaacaagaagctgccctatttgaagaaatgcgtcaactttcagaagcaacggtat |
168 |
Q |
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| T |
44826388 |
acaaacaagaagcatccctttttgaagaaatgcgccaactttcggaagctacggtat |
44826444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 33167778 - 33167657
Alignment:
| Q |
36 |
aaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgctacaaacaa---gaagctgccctat |
132 |
Q |
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| T |
33167778 |
aaaattgtggtggaaggcgtggagaggttcaaggaagaaaactatgatcttataagtgttgataccagtgggggtcacaaacaagaggaagatgctcttt |
33167679 |
T |
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| Q |
133 |
ttgaagaaatgcgtcaactttc |
154 |
Q |
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||||||||||||| ||| |||| |
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| T |
33167678 |
ttgaagaaatgcgccaagtttc |
33167657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 33116080 - 33115938
Alignment:
| Q |
34 |
tcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgctacaaac---aagaagctgccct |
130 |
Q |
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| T |
33116080 |
tcaaaattgccgtgaaaggtgtggacagatgcaaggaggaaa-ctgtgatcttataattgttgatgtgagtggggggcacaaacaagaagaagatgctct |
33115982 |
T |
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| Q |
131 |
atttgaagaaatgcgtcaactttcagaagcaacggtatttatta |
174 |
Q |
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| T |
33115981 |
tattgaagaaattcaccaagtttcaaaagcaacggtatttatta |
33115938 |
T |
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