View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_low_22 (Length: 241)
Name: NF3249_low_22
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 41556217 - 41556434
Alignment:
| Q |
12 |
ttccactattcttggttttataaacaaatttctcatggaagatgatgacatagaggaagactacaatatgttccaacatcatgaacatgaggagtcttcc |
111 |
Q |
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| T |
41556217 |
ttccactattcttggttttataaacaaatttctcatggaagatgatgacatagaggaagactacaatatgttccaacatcatgaacatgaggagtcttcc |
41556316 |
T |
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| Q |
112 |
actgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttcaacttactgagaaat |
211 |
Q |
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| T |
41556317 |
actgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttcaactcactgagaaat |
41556416 |
T |
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| Q |
212 |
catttcatgatgttattg |
229 |
Q |
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|||||||||||||||||| |
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| T |
41556417 |
catttcatgatgttattg |
41556434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41588848 - 41589076
Alignment:
| Q |
1 |
agtgaattctcttccactattcttggttttataaacaaatttctcatggaagatgatgacatagaggaagactacaatatgttccaacatcatgaacatg |
100 |
Q |
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| T |
41588848 |
agtgaattcacttccactgttcttggttttataaacaaatttctcatggaagatgatgactcagaggaagactacaatatgttccaacatcatgaacatg |
41588947 |
T |
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| Q |
101 |
aggagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttcaact |
200 |
Q |
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| T |
41588948 |
aagtgtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagagtacactcagttccaagattcttttgctcttcaact |
41589047 |
T |
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| Q |
201 |
tactgagaaatcatttcatgatgttattg |
229 |
Q |
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| T |
41589048 |
tactgaaaaatcatttcatgatgttattg |
41589076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41569903 - 41570131
Alignment:
| Q |
1 |
agtgaattctcttccactattcttggttttataaacaaatttctcatggaagatgatgacatagaggaagactacaatatgttccaacatcatgaacatg |
100 |
Q |
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||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41569903 |
agtgaattctcttcccctattcttggttatgtaagcaaatttctcatggaagatgatgacatagaggaagactacaatatgttccaacacaatgaacatg |
41570002 |
T |
|
| Q |
101 |
aggagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttcaact |
200 |
Q |
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| T |
41570003 |
atgggtcttccaatgctcttggttatataaaccgatttctcatggaagaagactttgaaaaagaatacactatgttccaagattcctttgctcttcaact |
41570102 |
T |
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| Q |
201 |
tactgagaaatcatttcatgatgttattg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
41570103 |
tactgagaaatcatttcatgatgttattg |
41570131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 41579046 - 41579137
Alignment:
| Q |
138 |
tctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttcaacttactgagaaatcatttcatgatgttattg |
229 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
41579046 |
tctcatggaagaagactttgaaaaggagtacactatgttccaagattcttttactcttcaacttactgaaaaatcatttcatgatgttattg |
41579137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 41556311 - 41556354
Alignment:
| Q |
10 |
tcttccactattcttggttttataaacaaatttctcatggaaga |
53 |
Q |
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| T |
41556311 |
tcttccactgttcttggttctataaaccaatttctcatggaaga |
41556354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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