View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_low_9 (Length: 455)
Name: NF3249_low_9
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 28683666 - 28683796
Alignment:
| Q |
67 |
aatgaggagtgggggccggtgcaccctttgggcgagttctgtatgcatctctcttgagttgttgcttttgtttc--tgtcaaataggacgtgaaagtagg |
164 |
Q |
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| T |
28683666 |
aatgaggagtggggggcggtgcaccctttgagcgagttctgtatgcatttctcttgagttgttgcttttatttctttgtcaagtaggacgtgaaagtagg |
28683765 |
T |
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| Q |
165 |
atcaacttcatttcttgcatatctcgaattt |
195 |
Q |
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| T |
28683766 |
atcaacttcatttcttgcatatctcgaattt |
28683796 |
T |
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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 237
Target Start/End: Original strand, 14114817 - 14114994
Alignment:
| Q |
63 |
tatcaatgaggagtgggggccggtgcaccctttgggcgagttctgtatgcatctctcttgagttgttgcttttgtttct--gtcaaataggacgtgaaag |
160 |
Q |
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| T |
14114817 |
tatcattgaggagtgggggatggtgcacccttataacgacttttgcatgcatctctcttgagttgttgtttttgtttctttgtctaataaggcgtgaaag |
14114916 |
T |
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| Q |
161 |
taggatcaacttcattt-cttgcatatctcgaatttgcataaacaactcaacttccttttgtaacaatggattgctat |
237 |
Q |
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| T |
14114917 |
gaggtttagctccattttctttcatatcacgaatttgcataaataacttcactcccttttgtaacaacggattgctat |
14114994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 245
Target Start/End: Original strand, 19900702 - 19900844
Alignment:
| Q |
106 |
tgtatgcatctctcttgagttgttgcttttgtttc--tgtcaaataggacgtgaaagtaggatcaacttca-tttcttgcatatctcgaatttgcataaa |
202 |
Q |
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| T |
19900702 |
tgtaggcatctctcttgagttgttgcttctgtttctttgtcaaatagggcccgaaaggaagttcagctccattttcttgcttatctcgaatttgcatgaa |
19900801 |
T |
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| Q |
203 |
caactcaacttccttttgtaacaatggattgctatgtggagga |
245 |
Q |
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| T |
19900802 |
caactcaacttccttatgtgacaacgaaccgctatgtggagga |
19900844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 25781468 - 25781532
Alignment:
| Q |
175 |
tttcttgcatatctcgaatttgcataaacaactcaacttccttttgtaacaatggattgctatgt |
239 |
Q |
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| T |
25781468 |
tttcttgcatatcacaaattcgcataagcaactcgacttccttctgtaacaatggatttctatgt |
25781532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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