View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3250_high_11 (Length: 239)

Name: NF3250_high_11
Description: NF3250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3250_high_11
NF3250_high_11
[»] chr3 (3 HSPs)
chr3 (15-239)||(32645545-32645769)
chr3 (28-114)||(37334419-37334505)
chr3 (15-77)||(43822489-43822551)
[»] chr8 (1 HSPs)
chr8 (15-102)||(28444829-28444916)
[»] chr1 (5 HSPs)
chr1 (29-104)||(21516721-21516796)
chr1 (15-97)||(32359123-32359205)
chr1 (15-95)||(7274589-7274669)
chr1 (20-101)||(32602736-32602817)
chr1 (29-89)||(9496753-9496812)
[»] chr4 (5 HSPs)
chr4 (15-97)||(52831396-52831478)
chr4 (20-120)||(24418297-24418397)
chr4 (15-63)||(2733439-2733487)
chr4 (28-105)||(17425744-17425821)
chr4 (29-98)||(52986540-52986605)
[»] chr5 (2 HSPs)
chr5 (20-105)||(32882654-32882739)
chr5 (44-101)||(11653813-11653870)
[»] chr2 (2 HSPs)
chr2 (19-77)||(38356778-38356836)
chr2 (29-90)||(21937871-21937931)
[»] chr7 (1 HSPs)
chr7 (29-98)||(24580970-24581039)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 32645769 - 32645545
Alignment:
Q  15 tcattaaaataaactataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctataagtcataaattcaatttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32645769 tcattaaaataaactataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataaactataagtcataaattcaatttt 32645670  T
Q  115 ttgtttaggttggagcgtcttaaatgcaaggaaattcgaagtcaagccaaagtgattggaacattagtaacctttggtggtgcattgctaatggcaattt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32645669 ttgtttaggttggagcgtcttaaatgcaaggaaattcgaagtcaagccaaagtgattggaacattagtaaccttcggtggtgcattgctaatggcaattt 32645570  T
Q  215 acaaaggacctggattcaacatttt 239  Q
    |||||||||||||||||||||||||    
T  32645569 acaaaggacctggattcaacatttt 32645545  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 37334505 - 37334419
Alignment:
Q  28 ctataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctataagtcataaattcaatttt 114  Q
    |||||| ||||||||||||||||| |||  ||||   ||||||||||||| || |||||||||| ||||||||||||  ||||||||    
T  37334505 ctataaactcgtgtaaaaatgacagttatcaaaccggtcttttttaatcatacaagcttataagatataagtcataagatcaatttt 37334419  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 43822551 - 43822489
Alignment:
Q  15 tcattaaaataaactataagctcgtgtaaaaatgacaattactaaacaactcttttttaatca 77  Q
    |||| ||||||| ||||||||| ||||||||||||||||||| ||||   |||||||||||||    
T  43822551 tcatgaaaataagctataagcttgtgtaaaaatgacaattaccaaacggatcttttttaatca 43822489  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 28444829 - 28444916
Alignment:
Q  15 tcattaaaataaactataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctataagtcat 102  Q
    |||| ||||||| |||||||||| ||||||||||| | |||| |||||  | ||||||||||| ||||||||||||||||||||||||    
T  28444829 tcataaaaataagctataagctcttgtaaaaatgagagttaccaaacaggtattttttaatcatacgagcttataagctataagtcat 28444916  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 21516721 - 21516796
Alignment:
Q  29 tataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctataagtcataa 104  Q
    |||||||||||| ||||||||||||||| |||||  ||||||||| ||| |||||||||||||||||||| |||||    
T  21516721 tataagctcgtgaaaaaatgacaattaccaaacatgtcttttttagtcatacgagcttataagctataagccataa 21516796  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 32359205 - 32359123
Alignment:
Q  15 tcattaaaataaactataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctataa 97  Q
    |||| ||||||| |||||||||||||||||||||||| || | ||||   ||||||||||||| |||||||||||||||||||    
T  32359205 tcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataa 32359123  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 7274669 - 7274589
Alignment:
Q  15 tcattaaaataaactataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctat 95  Q
    |||| |||||||  ||||||||||| ||||||||| | |||  |||||| ||||||||||||| |||||||||||||||||    
T  7274669 tcatgaaaataagttataagctcgtttaaaaatgatagttatgaaacaagtcttttttaatcatacgagcttataagctat 7274589  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 32602817 - 32602736
Alignment:
Q  20 aaaataaactataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctataagtca 101  Q
    |||||||||||||||||||||||||| ||| | |||  |||||| ||||||||||||| |  | |||||||| |||||||||    
T  32602817 aaaataaactataagctcgtgtaaaactgatagttagcaaacaaatcttttttaatcatataaacttataagttataagtca 32602736  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 9496812 - 9496753
Alignment:
Q  29 tataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttata 89  Q
    |||||||||||| ||||||||||||||| |||||  || |||||||||| | |||||||||    
T  9496812 tataagctcgtgaaaaaatgacaattaccaaacatatc-tttttaatcaaatgagcttata 9496753  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 52831478 - 52831396
Alignment:
Q  15 tcattaaaataaactataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctataa 97  Q
    |||| ||||||| ||| |||||||||||||||||||  |||| |||||| | ||||||||||| | |||||||||||||||||    
T  52831478 tcatgaaaataagctacaagctcgtgtaaaaatgaccgttaccaaacaagttttttttaatcatatgagcttataagctataa 52831396  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 24418297 - 24418397
Alignment:
Q  20 aaaataaactataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctataagtcataaattcaattttttgtt 119  Q
    |||||||  |||||||| ||||||||||||||||||  |||||  ||| ||||||||| | ||||| ||||| |||||| |||||  |||||||| ||||    
T  24418297 aaaataagatataagcttgtgtaaaaatgacaattagcaaacaggtctcttttaatcatatgagctgataaggtataagccataagctcaattttatgtt 24418396  T
Q  120 t 120  Q
    |    
T  24418397 t 24418397  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 2733439 - 2733487
Alignment:
Q  15 tcattaaaataaactataagctcgtgtaaaaatgacaattactaaacaa 63  Q
    ||||||||||||  |||||||| ||||||||||||||||||| ||||||    
T  2733439 tcattaaaataagttataagctggtgtaaaaatgacaattaccaaacaa 2733487  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 17425744 - 17425821
Alignment:
Q  28 ctataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctataagtcataaa 105  Q
    |||||||||||||| |||||| || |||| |||||| | ||||||||||| ||| |||| |||| |||| | ||||||    
T  17425744 ctataagctcgtgttaaaatggcagttaccaaacaagtattttttaatcatacgggcttttaagatatatgccataaa 17425821  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 52986540 - 52986605
Alignment:
Q  29 tataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctataag 98  Q
    ||||| |||||||||||||||||||||  |||||| ||| || ||||||||    |||||||||||||||    
T  52986540 tataaactcgtgtaaaaatgacaattatcaaacaaatctcttataatcaca----cttataagctataag 52986605  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 32882739 - 32882654
Alignment:
Q  20 aaaataaactataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctataagtcataaa 105  Q
    ||||||| |||||||||||||  |||||||||||||| |||| | ||| ||||| ||| | || |||| |||||||||||||||||    
T  32882739 aaaataagctataagctcgtgagaaaatgacaattaccaaacgagtctcttttagtcagaagaacttaaaagctataagtcataaa 32882654  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 11653813 - 11653870
Alignment:
Q  44 aaatgacaattactaaacaactcttttttaatcacacgagcttataagctataagtca 101  Q
    |||| ||| |||| |||||  ||||||||||||| ||||| |||||||||||||||||    
T  11653813 aaataacatttaccaaacaggtcttttttaatcatacgagattataagctataagtca 11653870  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 38356836 - 38356778
Alignment:
Q  19 taaaataaactataagctcgtgtaaaaatgacaattactaaacaactcttttttaatca 77  Q
    ||||||||||||||| || |||| |||| ||||||||  |||||| |||||||||||||    
T  38356836 taaaataaactataaacttgtgtgaaaaagacaattatcaaacaaatcttttttaatca 38356778  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 21937931 - 21937871
Alignment:
Q  29 tataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataa 90  Q
    |||| ||||||||||||||  ||||||| |||||| | ||||| ||||||||||||||||||    
T  21937931 tatacgctcgtgtaaaaatatcaattaccaaacaaatattttt-aatcacacgagcttataa 21937871  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 24581039 - 24580970
Alignment:
Q  29 tataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataagctataag 98  Q
    ||||| ||| ||||| ||||||| |||| |||||  ||||||||||||| |||||| ||||| |||||||    
T  24581039 tataaactcttgtaagaatgacacttaccaaacatatcttttttaatcatacgagcatataatctataag 24580970  T

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