View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3250_high_6 (Length: 250)
Name: NF3250_high_6
Description: NF3250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3250_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 32644882 - 32645123
Alignment:
| Q |
6 |
aggagcacagacaagcaacgatgatcatgcaaagaggattaaaagctgttgcaaaaactgggcctctcatttgcatcaccagcccttgaacatagtatgc |
105 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32644882 |
aggagcccaaacaagcaacgatgatcatgcaaagaggattaaaagctgttgcaaaaactgggcctctcatttgcatcaccagcccttgaacatagtatgc |
32644981 |
T |
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| Q |
106 |
aattcctgaactaactattccctatataataaattaagaaactgattaagaaaattatttgaannnnnnnctaactaagcttgtgaatgagaaactaatt |
205 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32644982 |
aattcctgaactaactattccctat---ataaattaagaaactgattaagaaaattatttgaatttttttctaactaagcttgtgaatgagaaactaatt |
32645078 |
T |
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| Q |
206 |
aacggattaacaaaccgtgtaaagaggagcatagagcctataatc |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32645079 |
aacggattaacaaaccgtgtaaagaggagcatagagcctataatc |
32645123 |
T |
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