View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3250_low_10 (Length: 241)
Name: NF3250_low_10
Description: NF3250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3250_low_10 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6371059 - 6371284
Alignment:
| Q |
1 |
aaattaaatccctctaattgtgtttcattgcttctaaatggcttagttctaacacaattcccaccttgattccataacccattttcaaaatgtgatggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6371059 |
aaattaaatccctctaattgtgtttcattgcttctaaatggcttagttctaacacaattcccaccttgattccataacccattttcaaaatgtgatggtg |
6371158 |
T |
|
| Q |
101 |
aaagtgtcctaagaaatgttatgcccttaaaattctttaaattattgatggctttaaatgcagtcctaaatgctcttctataaccatggtacatggttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6371159 |
aaagtgtcctaagaaatgttatgcccttaaaattctttaaattattgatggctttaaatgcagtcctaaatgctcttctataaccatggtacatggttaa |
6371258 |
T |
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| Q |
201 |
atcagggacattttctaagagacaat |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
6371259 |
atcagggacattttctaagagacaat |
6371284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6364418 - 6364643
Alignment:
| Q |
1 |
aaattaaatccctctaattgtgtttcattgcttctaaatggcttagttctaacacaattcccaccttgattccataacccattttcaaaatgtgatggtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6364418 |
aaattaaatccctctaattgtgtttcattgcttctaaatggcttagttctaacacaattcccaccttgattccataacccattttcaaaatgtgagggtg |
6364517 |
T |
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| Q |
101 |
aaagtgtcctaagaaatgttatgcccttaaaattctttaaattattgatggctttaaatgcagtcctaaatgctcttctataaccatggtacatggttaa |
200 |
Q |
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| T |
6364518 |
aaaatgtcctaagaaatgttatgcccttaaaattctgtaaattatttatggctttaaatgcagtcctaaatgctcttctataaccatggtacatggttaa |
6364617 |
T |
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| Q |
201 |
atcagggacattttctaagagacaat |
226 |
Q |
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| T |
6364618 |
atcagggacattttctaagagacaat |
6364643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 6554425 - 6554616
Alignment:
| Q |
35 |
taaatggcttagttctaacacaattcccaccttgattccataacccattttcaaaatgtgatggtgaaagtgtcctaagaaatgttatgcccttaaaatt |
134 |
Q |
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||||||||||||| || | ||||||||||||||| ||||||| ||||| |||||||||||||||| || ||||||||||||||| | ||||||||||| |
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| T |
6554425 |
taaatggcttagtccttaaacaattcccaccttggttccatataccattctcaaaatgtgatggtgcaaatgtcctaagaaatgtcacacccttaaaatt |
6554524 |
T |
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| Q |
135 |
ctttaaattattgatggctttaaatgcagtcctaaatgctcttctataaccatggtacatggttaaatcagggacattttctaagagacaat |
226 |
Q |
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| ||| |||| | |||| |||||||||||||||| ||| ||||||| |||| ||||| |||||||||| |||||||||||||||||||| |
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| T |
6554525 |
ttctaagctatttaaggctctaaatgcagtcctaaaagcttttctatagccataatacattgttaaatcagtgacattttctaagagacaat |
6554616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 2324 - 2374
Alignment:
| Q |
176 |
ttctataaccatggtacatggttaaatcagggacattttctaagagacaat |
226 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2324 |
ttcnataaccatggtacatggttaaatcagggacattttctaagagacaat |
2374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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