View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3250_low_2 (Length: 446)
Name: NF3250_low_2
Description: NF3250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3250_low_2 |
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| [»] scaffold0929 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 188 - 424
Target Start/End: Original strand, 6364115 - 6364353
Alignment:
| Q |
188 |
tatttcatttgttaattttcgtgcaaatgaagtcttttttcttcagctgatctcac--cctccatcttcaacatatctaacaagaaatcactccatgtgt |
285 |
Q |
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| T |
6364115 |
tatttcatttgtcaatttgtgtgcaaatgaagtcttctttcttctgctgatctcacaccctccatcttcaacatatctaacaagaaatcactccatgtgt |
6364214 |
T |
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| Q |
286 |
caataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacattctcattaggccaatgtccatatttactagggtgcccatctggcctcaa |
385 |
Q |
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| T |
6364215 |
caataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacattctcattaggccaatgtccatatttactagggtgcccatctggcctcaa |
6364314 |
T |
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| Q |
386 |
cattgttgcttttgttgtatcatataacctaaatttcaa |
424 |
Q |
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| T |
6364315 |
cattgttgcttgtgttgtatcatataacctaaatttcaa |
6364353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 187 - 338
Target Start/End: Original strand, 2171 - 2326
Alignment:
| Q |
187 |
ctatttcatttgttaattttcgtgcaaatgaagtcttttttcttcagctgatctcaccct----ccatcttcaacatatctaacaagaaatcactccatg |
282 |
Q |
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| T |
2171 |
ctatttcatttgtcaatttttgtgcaaatgaagtcttttttcttcagctgatctcaccctccctccatcttcaacatatctaacaagaaatcactccatg |
2270 |
T |
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| Q |
283 |
tgtcaataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacattc |
338 |
Q |
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| T |
2271 |
tgtcaataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacattc |
2326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 2002 - 2068
Alignment:
| Q |
18 |
gaaggagcataatgggatacatgtcttgaattttcaattcaaagaaatgaacaattgaagcattgtc |
84 |
Q |
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| T |
2002 |
gaaggagcataatgggatacatgtcttgaattttcaattcaaagaaatgaacaattgaagcattgtc |
2068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 427
Target Start/End: Original strand, 6554147 - 6554329
Alignment:
| Q |
245 |
ctccatcttcaacatatctaacaagaaatcactccatgtgtcaataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacattctcatta |
344 |
Q |
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| T |
6554147 |
ctccatcttcaacatttctagcaagaaatcactccatgtatctataggccctggcaaacaccaatgaacacaatcattatacaatgtcacattttcttga |
6554246 |
T |
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| Q |
345 |
ggccaatgtccatatttactagggtgcccatctggcctcaacattgttgcttttgttgtatcatataacctaaatttcaaacc |
427 |
Q |
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| T |
6554247 |
ggtaaatgtccatacctacttggatgaccatctggtctcaataacatagcttgagttgtatcaagcaacctaaatttcaaacc |
6554329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 337
Target Start/End: Original strand, 6543639 - 6543724
Alignment:
| Q |
252 |
ttcaacatatctaacaagaaatcactccatgtgtcaataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacatt |
337 |
Q |
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| T |
6543639 |
ttcaacatatatagcaataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcattgtaaaatgtcacatt |
6543724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 15256695 - 15256740
Alignment:
| Q |
277 |
tccatgtgtcaataggtccaggcaagcaccaatgcacacaatcatt |
322 |
Q |
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| T |
15256695 |
tccatgtgtctataggtccaggcaaacaccaatgaacacaatcatt |
15256740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 15265220 - 15265265
Alignment:
| Q |
277 |
tccatgtgtcaataggtccaggcaagcaccaatgcacacaatcatt |
322 |
Q |
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| T |
15265220 |
tccatgtatcaattggtccaggcaaacaccaatgaacacaatcatt |
15265265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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