View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3250_low_3 (Length: 368)
Name: NF3250_low_3
Description: NF3250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3250_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 31944140 - 31943775
Alignment:
| Q |
18 |
ttgatgggattttgtataagctggacgataatgcttacgtcaaggtttctannnnnnnnnattcaatgttga---------taaattt-----gtgtttt |
103 |
Q |
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| T |
31944140 |
ttgatgggattttgtataagctggacgataatgcttatgtcaaggtttctatttttttttattcaatgttgaatgtttgcttatattttacttgtgtttt |
31944041 |
T |
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| Q |
104 |
cttatattttacttgatttcatgagtttggtccttnnnnnnnn---tgttgaatgtttgctgttttaggatttatttctatgattgcatgttgaaaattc |
200 |
Q |
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| T |
31944040 |
cttatattttacttgatttcatgagtttagtccttcaaaaaaaaaatgttgaatgtttgctgttttaggatttatttctatgattacatgttgaaaattc |
31943941 |
T |
|
| Q |
201 |
ggtgtttatgttattttgtttgattt-atgttgaaagnnnnnnnnnnn--agggtttatttcttcacatgttgaaaattttgttttcagggtttatttct |
297 |
Q |
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| T |
31943940 |
ggtgtttatgttattttgtttgattttatgttgaaagtttttttttttttagggtttatttcttcatatgttgaaaattttgttttcagggtttatttct |
31943841 |
T |
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| Q |
298 |
tcatgttggaaattatattttaattgacatgatttcatgctgaaaattgtttgttttatggttcat |
363 |
Q |
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| T |
31943840 |
tcatgttggaaattatattttaattgacatgatttcttgctgaaaattgtgtgttttatggttcat |
31943775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 363
Target Start/End: Complemental strand, 1341981 - 1341881
Alignment:
| Q |
265 |
atgttgaaaattttgttttc-agggtttatttcttcatgttggaaattatattttaatt-gacatgatttcatgctgaaaattgtttgttttatggttca |
362 |
Q |
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| T |
1341981 |
atgttcaaaattttgttttttagggtttatttcttcttgttggaaattaaatttttctttgacatgatttcttgcttaaaattgtgtgttttatggttca |
1341882 |
T |
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| Q |
363 |
t |
363 |
Q |
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| T |
1341881 |
t |
1341881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 1342169 - 1342060
Alignment:
| Q |
18 |
ttgatgggattttgtataagctggacgataatgcttacgtcaaggtttctannnnnnnnnattcaatgttgataaatttgtg-ttttcttatattttact |
116 |
Q |
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| T |
1342169 |
ttgatgggattttatataagctggaggataatgcttatgtcaaggtttctattttattttattaaatgttgataaatttgtgcttttgttttattttact |
1342070 |
T |
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| Q |
117 |
tgatttcatg |
126 |
Q |
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| |||||||| |
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| T |
1342069 |
ttatttcatg |
1342060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 1342061 - 1341983
Alignment:
| Q |
147 |
tgttgaatgtttgctgttttaggatttatttctatgattgcatgttgaaaattcggtgt-ttatgttattttgtttgattt |
226 |
Q |
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| T |
1342061 |
tgttgaaattttggtgttttagggtttatttctttgattgcatgttgaaaatt--gtgtattatgttattttgtttgattt |
1341983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 9394628 - 9394578
Alignment:
| Q |
18 |
ttgatgggattttgtataagctggacgataatgcttacgtcaaggtttcta |
68 |
Q |
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| T |
9394628 |
ttgatgggattttatataagctggaggataatgcttatgtcaaggtttcta |
9394578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 9394534 - 9394445
Alignment:
| Q |
147 |
tgttgaatgtttgctgttttaggatttatttctatgattgcatgttgaaaattcggtgtttatgttattttgtttga-tttatgttgaaa |
235 |
Q |
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||||||| |||| ||||||||| ||||||||| ||||| ||||||| || | || ||||||||||||||||||| |||||||||||| |
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| T |
9394534 |
tgttgaaaatttgatgttttagggtttatttctttgatttcatgttggcaactgtgtttttatgttattttgtttgattttatgttgaaa |
9394445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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