View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3250_low_4 (Length: 341)
Name: NF3250_low_4
Description: NF3250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3250_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 42 - 326
Target Start/End: Complemental strand, 41579251 - 41578967
Alignment:
| Q |
42 |
ataattggatcaagttcaaagtagctagtcctaccactgctgaaactataatcactgaagttagggctatgcacaaagtagcaatnnnnnnnnnnnnnnn |
141 |
Q |
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| T |
41579251 |
ataattggatcaagttcaaagtagctagtcctaccactgctgaaactataatcactgaagttagggctatgcacaaagtagcaataggaggaggaggagg |
41579152 |
T |
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| Q |
142 |
nnnnnnnntgtgaacaataacatcatgaaatgatttttcagtaagttgaagagtaaaagaatcctggaacatagtgtactccttttcaaagtcttcttcc |
241 |
Q |
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| T |
41579151 |
aagaggagtgtgaacaataacatcatgaaatgatttttcagtaagttgaagagtaaaagaatcttggaacatagtgtactccttttcaaagtcttcttcc |
41579052 |
T |
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| Q |
242 |
atgagatttgagttaacataatattttttatttgtgtacgaggttgaatatggttggttgattgatataagtggctgatcatatt |
326 |
Q |
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| T |
41579051 |
atgagatttgagttaacataatattttttatttgtgtacgaggttgaatatggttggttgattgatataagtggctgatcatatt |
41578967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 41589292 - 41589176
Alignment:
| Q |
4 |
ggagtagcaaagggttgtaactgtagttgtatgagtctataattggatcaagttcaaagtagctagtcctaccactgctgaaactataatcactgaagtt |
103 |
Q |
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| T |
41589292 |
ggagtagaaaagggttgtaattgtagttgtatgagtctataattggatcaagttcaaaggagctagtgctatcactgcttaaactataatcactgaagtt |
41589193 |
T |
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| Q |
104 |
agggctatgcacaaagt |
120 |
Q |
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| T |
41589192 |
agggctatccacaaagt |
41589176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 41556647 - 41556535
Alignment:
| Q |
4 |
ggagtagcaaagggttgtaactgtagttgtatgagtctataattggatcaagttcaaagtagctagtcctaccactgctgaaactataatcactgaagtt |
103 |
Q |
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| T |
41556647 |
ggagtagaaaagggttgttattatagttgtatgagtctataattggatcaggttcaaaggagctagtgctgccactgctgaaactataatcactgaagtt |
41556548 |
T |
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| Q |
104 |
agggctatgcaca |
116 |
Q |
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| T |
41556547 |
agggctatgcaca |
41556535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 41556440 - 41556343
Alignment:
| Q |
150 |
tgtgaacaataacatcatgaaatgatttttcagtaagttgaagagtaaaagaatcctggaacatagtgtactccttttcaaagtcttcttccatgaga |
247 |
Q |
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| T |
41556440 |
tgtgaacaataacatcatgaaatgatttctcagtgagttgaagagcaaaagaatcttggaacatagtgtattctttttcaaagtcttcttccatgaga |
41556343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 41570137 - 41570040
Alignment:
| Q |
150 |
tgtgaacaataacatcatgaaatgatttttcagtaagttgaagagtaaaagaatcctggaacatagtgtactccttttcaaagtcttcttccatgaga |
247 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||||||| || |||||||||||||||||||||||| |
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| T |
41570137 |
tgtgaacaataacatcatgaaatgatttctcagtaagttgaagagcaaaggaatcttggaacatagtgtattctttttcaaagtcttcttccatgaga |
41570040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 41589082 - 41588985
Alignment:
| Q |
150 |
tgtgaacaataacatcatgaaatgatttttcagtaagttgaagagtaaaagaatcctggaacatagtgtactccttttcaaagtcttcttccatgaga |
247 |
Q |
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| T |
41589082 |
tgtgagcaataacatcatgaaatgatttttcagtaagttgaagagcaaaagaatcttggaactgagtgtactctttttcaaagtcttcttccatgaga |
41588985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 41570352 - 41570251
Alignment:
| Q |
17 |
gttgtaactgtagttgtatgagtctataattggatcaagttcaaagtagctagtcctaccactgctgaaactataatcactgaagttagggctatgcaca |
116 |
Q |
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||||||| |||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
41570352 |
gttgtaattgtagttgtatgtctctataattggttcaagttcaaaggagctagtgctaccactgctgaaactataatcactgatgtcagggctatgcaca |
41570253 |
T |
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| Q |
117 |
aa |
118 |
Q |
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|| |
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| T |
41570252 |
aa |
41570251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 41582763 - 41582725
Alignment:
| Q |
4 |
ggagtagcaaagggttgtaactgtagttgtatgagtcta |
42 |
Q |
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||||||| |||||||||||| |||||||||||||||||| |
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| T |
41582763 |
ggagtagaaaagggttgtaattgtagttgtatgagtcta |
41582725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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