View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3250_low_5 (Length: 276)
Name: NF3250_low_5
Description: NF3250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3250_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 5376772 - 5377022
Alignment:
| Q |
12 |
atcatcaacaaaataaacaacattctatatttaacaaaagaaagnnnnnnnnnctacctcatcatcactaaaaaccatctcaatagagtttggttgatca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5376772 |
atcatcaacaaaataaacaacattctatatttaacaaaagaaagaaaaaaaaactacctcatcatcactaaaaaccatctcaatagagtttggttgatca |
5376871 |
T |
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| Q |
112 |
gccttcaaaaaagttgggactgcccaaacccgaaccttaaacatccatgcctctataccaggaacaacagcagcaacgaatcaaaagatttttccatttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5376872 |
gccttcaaaaaagttgggactgcccaaacccgaaccttaaacatccatgcctctataccaggaacaacagcagcaacgaatcaaaagatttttccatttc |
5376971 |
T |
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| Q |
212 |
aaattgcaatttcaattttaaaacatggaaacaaagtaatgtgtgaaatgt |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5376972 |
aaattgcaatttcaattttaaaacatggaaacaaagtaatgtgtgaaatgt |
5377022 |
T |
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