View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3251_low_1 (Length: 666)
Name: NF3251_low_1
Description: NF3251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3251_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 570; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 1 - 650
Target Start/End: Complemental strand, 30337827 - 30337176
Alignment:
| Q |
1 |
ataataaaacaattctaatttttgattaacttcttaattggctctcaaggcttacaacataaaggaaactagtaattaaatctctgaaattacagtacat |
100 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30337827 |
ataataaaacaattcaaatttttcattaacttcttaattggctc--aaggcttacaacataaaggaaactagtaattaaatcactgaaattacagtacat |
30337730 |
T |
|
| Q |
101 |
atctgcaatttcaggtgtcacaacaaacaagtgactttagggaattcaaacaaacaagacattataaaagaaaaaagcctttgagccaaaagtgctt--- |
197 |
Q |
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| T |
30337729 |
atctggaatttcaggtgttacaacaaacaagtgactttagggaattcaaacaaacaagacattataaaagaaaaaagcctttgagccaaaagtgcttgct |
30337630 |
T |
|
| Q |
198 |
-atatcagaaactatcattctttttctttcctaaccagagatttatgtgtcctgacaatttgaagtttattaatcattccaaactcggcaaatgagaacg |
296 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30337629 |
tatatcagaaactatcattctttttctttcccaaccagagatttatgtgtcctgacaatttgaagtttattaatcattccaaactcggcaaatgagaacg |
30337530 |
T |
|
| Q |
297 |
acgcctgaatgggagaaaggttatctatgaaaacgagttgttggagagttgtagggaaagtggaaagagagataatgatagggttttctcggttgttgaa |
396 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
30337529 |
acccctgaatgggagaaaggttatctatgaaaacgagttgttggagagttgtagggaaagtggaaagagagataatgataggattttcacggttgttgaa |
30337430 |
T |
|
| Q |
397 |
gcattcacggaagatgagttttccaaggtagttgaaaggggtgaaaagagttgagttaaaggtagcattatgggagcaaggtagggtgggattttgtttt |
496 |
Q |
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| T |
30337429 |
gcattcacggaagatgagttttccaaggtagttgaaaggggtgaaaagagttgagttaaaggtagcattatgggagcaaggtagggtgggattttgtttt |
30337330 |
T |
|
| Q |
497 |
tcatcggcatcatagttgccgaagttcatctcaacaacgtgtgatcttagtttgcgatactgaagaagatgaaagtaggagtaacggcaaacaatgccgg |
596 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
30337329 |
tcatcggaatcatagttgccgaagttcatctcaacaacgtgtgatcttagtttgcgatacttaagaagatgaaagtaggagtaacggcaaacaacgccgg |
30337230 |
T |
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| Q |
597 |
gtggtgggaagcgacagaggtcgccggagaagcgagttgtccatgggaaatctg |
650 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30337229 |
gtgggggtaagcgacagaggtcgccggagaagcgagttgtccatgggaaatctg |
30337176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 547 - 650
Target Start/End: Complemental strand, 30325642 - 30325539
Alignment:
| Q |
547 |
tttgcgatactgaagaagatgaaagtaggagtaacggcaaacaatgccgggtggtgggaagcgacagaggtcgccggagaagcgagttgtccatgggaaa |
646 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
30325642 |
tttgcgatactgaagaaaatgaaagtaggagtaacggcaaacaatgccgggtggtgggaagcgacagaggtcgccggggaagcgagtggtccatgggaaa |
30325543 |
T |
|
| Q |
647 |
tctg |
650 |
Q |
| |
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|||| |
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| T |
30325542 |
tctg |
30325539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 303 - 445
Target Start/End: Complemental strand, 30325886 - 30325744
Alignment:
| Q |
303 |
gaatgggagaaaggttatctatgaaaacgagttgttggagagttgtagggaaagtggaaagagagataatgatagggttttctcggttgttgaagcattc |
402 |
Q |
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||||||||||| |||| || | ||||| || |||| |||| || |||||||| ||||||||||| | || ||||||||| |||||||||||||||| |
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| T |
30325886 |
gaatgggagaagggttgtcaaagaaaataagatgttctagagatggagggaaaggggaaagagagaggttaatggggttttctgggttgttgaagcattc |
30325787 |
T |
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| Q |
403 |
acggaagatgagttttccaaggtagttgaaaggggtgaaaaga |
445 |
Q |
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| T |
30325786 |
acggaaggtgagtaatcggaggtagttgaaaggggtgaagaga |
30325744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 30326004 - 30325962
Alignment:
| Q |
173 |
aaaagcctttgagccaaaagtgcttatatcagaaactatcatt |
215 |
Q |
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| T |
30326004 |
aaaagcctttgagccaaaagtgcttttatgagaaactatcatt |
30325962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 30321862 - 30321812
Alignment:
| Q |
16 |
taatttttgattaacttcttaattggctctcaaggcttacaacataaaggaaa |
68 |
Q |
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| T |
30321862 |
taatttttcattaacttcttaattgg--ctcaaggcttacaatataaaggaaa |
30321812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 30333556 - 30333492
Alignment:
| Q |
126 |
aacaagtgactttagggaattcaaacaaacaagacattataaaagaaaaaagcctttgagccaaaagt |
193 |
Q |
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||||||||||||||||| |||||||||||| |||| | ||| || ||||||||||||||||||||| |
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| T |
30333556 |
aacaagtgactttagggcattcaaacaaacgagac--tttaatag-taaaagcctttgagccaaaagt |
30333492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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