View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3251_low_2 (Length: 409)
Name: NF3251_low_2
Description: NF3251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3251_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 45349678 - 45349287
Alignment:
| Q |
1 |
tgtaatgtaattgatttatctctgtttcgtaactttcagtagcaaaaaactcgtataccatataatcgtac--tatcagatgagcatttcaataggtgca |
98 |
Q |
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| T |
45349678 |
tgtaatgtaattgatttatctctgtttcgtaactttcagtagcaaaaaactcgtataccatataatcgtactatatcagacgagcatttcaataggtgca |
45349579 |
T |
|
| Q |
99 |
gtccaccaaaccaacaataatcataaaatgttcattgctcctctnnnnnnntataaaattgtcattggtttttaggttcatgtgagtattttcacattcg |
198 |
Q |
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| T |
45349578 |
gtccaccaaaccaacaataatcataaaatgttcattgctcctctaaaaaaatataaaattgtcattgctttttaggttcatgtgagtattttcacattcg |
45349479 |
T |
|
| Q |
199 |
atttacaagtgggatattattaattacacattgcatacttacaaaacaagtcacttaatactattgatattgcattttcaaatcaatatatagctcctac |
298 |
Q |
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|||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45349478 |
atttacaagtggga---tattaattacacattgcaaacatacaaaacaagtcacttaatactattgatattgcattttcaaatca----atagctcctac |
45349386 |
T |
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| Q |
299 |
tcatgagtgtggtttcgaagaacnnnnnnntgaaaacccaataaccttcttaaagcttctacaagtacaattatcaatgttataatcttcttcaatatt |
397 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45349385 |
tcatgagtgtggtttcgaagaacaaaaaaatgaaaaccccataaccttcttaaagcttctacaagtacaattatcaatgttataatcttcttcaatatt |
45349287 |
T |
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