View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3251_low_5 (Length: 219)
Name: NF3251_low_5
Description: NF3251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3251_low_5 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 10533069 - 10532881
Alignment:
| Q |
31 |
catgatataagttgtgatttgttgacgatgtaaaacgtatagaagtctttaaaatacctcaaaaaggtaagtcaagaaattttgttcaagtacatcaatt |
130 |
Q |
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| T |
10533069 |
catgatataagttgtgatttgttgtcgatgtaaaacgtatagaagtctttaaaatacctcaaaaaggtaagtcaagaaattttgttcaagtacatcaatt |
10532970 |
T |
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| Q |
131 |
tctttagaagttaagccttgttgttccaacttatgtgccccagatacaggatcaaaaagtgcatacagttgctgtatatacaacaacac |
219 |
Q |
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| T |
10532969 |
tctttacaagttaagccttgttgttccaacttatgtgccccagatacaggatcaaaaagtgcatacagttgctgtatatacaaaaacac |
10532881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 10583650 - 10583795
Alignment:
| Q |
68 |
tatagaagtctttaaaatacctcaaaaaggtaagtcaagaaattttgttc-aagtacatcaatttctttagaagttaagccttgttgttccaacttatgt |
166 |
Q |
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| T |
10583650 |
tataaaagtctctaaaatacctcaaaaaggtaagtcaagaaattttgttctaagtacatcaatttctttataaattaagcctcgttgttccaacttgtgt |
10583749 |
T |
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| Q |
167 |
gccccagatacaggatcaaaaagtgcatacagttgctgtatatacaa |
213 |
Q |
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| T |
10583750 |
g-cccagatacaggataaaaaaatgaatacagtttctatagatacaa |
10583795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 32471734 - 32471633
Alignment:
| Q |
85 |
tacctcaaaaaggtaagtcaagaaattttgttcaagtacatcaatttctttagaagttaagccttgttgttccaacttatgtgccccagatacaggatca |
184 |
Q |
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| T |
32471734 |
tacctgaaataggtatgtcaagaaattctgttccagcacatcaatttcttcaggagccaggttctgctgttccaacttttgtgccccagatacaggatca |
32471635 |
T |
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| Q |
185 |
aa |
186 |
Q |
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|| |
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| T |
32471634 |
aa |
32471633 |
T |
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