View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_high_11 (Length: 403)
Name: NF3252_high_11
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36522333 - 36522119
Alignment:
| Q |
1 |
gggctttttccaatgctttggtaagaaggaactattaacattgaagttagtgtaaagtgggctgtgaaagatcatgtatacttgtactttttggtcctag |
100 |
Q |
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| T |
36522333 |
gggctttttccaatgttttggtaagaaggaactattagcattgaagttagtgtaaagtgggttgtgaaagatcatgtatacttgttctttttggtcctag |
36522234 |
T |
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| Q |
101 |
aatagcgttatttgaatgtgtaaagggatttgaggaccaaaaaagtgggaatctgtcaacatatattggaagatacgttaagggttagcaataaatggaa |
200 |
Q |
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| T |
36522233 |
aatagcgttatttgaatgtgtaaagggatttgaggaccaaaaaagtgggaatatgtcaacatatattggaagatacgttaagggttagcaataaattgaa |
36522134 |
T |
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| Q |
201 |
gctttaagttgattg |
215 |
Q |
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| T |
36522133 |
gctttaagttgattg |
36522119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 286 - 385
Target Start/End: Complemental strand, 36522048 - 36521949
Alignment:
| Q |
286 |
tggtcactattcaatggccatttggttagttagaagttagaaaaagtgatatactatagtactatttctcctattaaaatgtcaatgatttgctcaatag |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36522048 |
tggtcactattcaatggccatttggttagttagaagttagaaaaagtgatatactatagtactatttctcctattaaaatgtcaatgatttgctcaatag |
36521949 |
T |
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