View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_high_16 (Length: 326)
Name: NF3252_high_16
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 22384675 - 22384373
Alignment:
| Q |
18 |
gtaaactgcttttccgtctcgaagtggttcattctttccatcaaaaaatgcaaaatcaaacgggaaattatcttgtccatagtaaaggctaaggaaaggg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22384675 |
gtaaactgcttttccgtctcgaagtggttcattctttccatcaaaaaatgcaaaatcaaacgggaaattatcttgtccatagtaaaggctaaggaaaggg |
22384576 |
T |
|
| Q |
118 |
tagatattaaccgtaaaagttgagttggttgaatatagaaactggattatttcaatagtgatgtctcttaattcaggtctgaagtcacctgcagatggca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22384575 |
tagatattaaccgtaaaagttgagttggttgaatatagaaactggactatttcaatagtgatgtctcttaattcaggtctgaagtcacctgcagatggca |
22384476 |
T |
|
| Q |
218 |
ctggatttgagtctggtgaataataaatgtcagcattaaatggaacagttactttgacctttgattccaaccctgcattgttgagtgaagtctgtatatt |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22384475 |
ctggatttgagtctggtgaatagtaaatgtcagcattaaatggaacagttactttgacctttgattccaaccctgcattgttgagtgaagtctgtatatt |
22384376 |
T |
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| Q |
318 |
ctt |
320 |
Q |
| |
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||| |
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| T |
22384375 |
ctt |
22384373 |
T |
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