View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3252_high_17 (Length: 322)
Name: NF3252_high_17
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 42333553 - 42333670
Alignment:
| Q |
19 |
tcctcacgctctcttcttcccacgcaaacaaccgacgcctccacaaccacgccccacaatcaacctcccaaccgtgcctccccataagctccactgtaca |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42333553 |
tcctcacgctctcttcttcccaggcaaacaaccgacgcctccacaaccacgccccaccatcaacctcccaaccacgcctccccataagctccactgtaca |
42333652 |
T |
|
| Q |
119 |
atctttctttctccatgg |
136 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
42333653 |
atctttctttctccatgg |
42333670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 42334042 - 42334127
Alignment:
| Q |
154 |
ggtagtgacggtaatattagttgaacaagcgactaccattttaaatcaatatta--atatcatacatatgttcttcaaacaaaaat |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
42334042 |
ggtagtgacggtaatattagttgaacaagctactatcattttaaatcaatattaatatatcatacatatgttcttcaaaaaaaaat |
42334127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 29060617 - 29060714
Alignment:
| Q |
23 |
cacgctctcttcttcccacgcaaacaaccgacgcctccacaaccacgccccacaatcaacctcccaaccgtgcctccccataagctccactgtacaatct |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
29060617 |
cacgctctattcttcccacgcaaacaactgacgcctccac------gccccaccatcaaccacccaaccgcgcctccccataagctccacggtacaatct |
29060710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 48778372 - 48778424
Alignment:
| Q |
36 |
tcccacgcaaacaaccgacgcctccacaaccacgccccacaatcaacctccca |
88 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||| || ||| |||||||| |
|
|
| T |
48778372 |
tcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctccca |
48778424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 32808048 - 32808080
Alignment:
| Q |
29 |
ctcttcttcccacgcaaacaaccgacgcctcca |
61 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
32808048 |
ctcttcttcccacgcaaacaacctacgcctcca |
32808080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 33335585 - 33335677
Alignment:
| Q |
20 |
cctcacgctctcttcttcccacgcaaacaaccgacgcctccacaaccacgccccacaatcaacctcccaaccgtgcctccccataagctccac |
112 |
Q |
| |
|
|||||||| ||| || || |||||||||| ||||| ||||||| ||||||| ||| ||| | |||||| | | ||||||||||| ||||||| |
|
|
| T |
33335585 |
cctcacgcgctcctcctctcacgcaaacagacgacgtctccacacccacgcctcaccatctatctcccacctgagcctccccatacgctccac |
33335677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 23027988 - 23028040
Alignment:
| Q |
36 |
tcccacgcaaacaaccgacgcctccacaaccacgccccacaatcaacctccca |
88 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||| || ||| |||||||| |
|
|
| T |
23027988 |
tcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctccca |
23028040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University