View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3252_high_24 (Length: 275)
Name: NF3252_high_24
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 260
Target Start/End: Complemental strand, 3282143 - 3281888
Alignment:
| Q |
5 |
agagagatgaacttacatgatacatgaaatggaattccaacttttcttgaattgaattgttgatgagaaaatcttttggagtaaggtagagatccacctc |
104 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3282143 |
agagagaagaacttacatgatacatgaaatggaattccaacttttcttgaattgaattgttgatgagaaaatcttttggagtaaggtagagatccacctc |
3282044 |
T |
|
| Q |
105 |
tgatcttggtgaaagaactgtgagagagaaaacaagcatccatattatttgagtaactttgttttaagatgagagtgagagatcaagtttggtggaatat |
204 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3282043 |
tgatcttggtgaaagaactgtgggagagaaaacaagcatccatattatttgagtaactttgtttttagatgagagtgagagatcaagtttggtggaatat |
3281944 |
T |
|
| Q |
205 |
gtatatggtataaattgaaaatgtgatttaataagcaccacatagaagtattttgt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3281943 |
gtatatggtataaattgaaaatgtgatttaataagcaccacatagaagtattttgt |
3281888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University