View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_high_26 (Length: 262)
Name: NF3252_high_26
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_high_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 54348412 - 54348173
Alignment:
| Q |
17 |
aaaaattagacaggtgaattgtttcttataataaggataagacgaagtactattaggtacctcggggaaggaggtgaggaagccgcgagaggaagcaggg |
116 |
Q |
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| T |
54348412 |
aaaaagtagacaagtgaattgtttcttataataaggataag------tactattaggtacctcggggaaggaggtgaggaagccgcgagaggaagcaggg |
54348319 |
T |
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| Q |
117 |
gagacttcggcggtgtagaccggggcgatcatgagagcgtagccgataccgataccagcaatgaaacgagcaaacatgagaaaggcaaagttgggagaga |
216 |
Q |
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| T |
54348318 |
gagacttcggcggtgtagaccggggcgatcatgagagcgtagccgataccgataccagcaatgaaacgagcaaacatgagaaaggcaaagttgggagaga |
54348219 |
T |
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| Q |
217 |
atcccatgaggagtgcgcctgcgaagaagatggagccggcaaggac |
262 |
Q |
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| T |
54348218 |
atcccatgaggagtgcgcctgcgaagaagatggagccagcaaggac |
54348173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 26153062 - 26152941
Alignment:
| Q |
75 |
acctcggggaaggaggtgaggaagccgcgagaggaagcaggggagacttcggcggtgtagaccggggcgatcatgagagcgtagccgataccgataccag |
174 |
Q |
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| T |
26153062 |
acctcagggaaagaagtgagaaagccgcgagaggaagcgggggagacttcagcggtatagaccggggcaatcatgagagcatagccgatgccaactccgg |
26152963 |
T |
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| Q |
175 |
caatgaaacgagcaaacatgag |
196 |
Q |
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| T |
26152962 |
caacaaaacgaccaaacatgag |
26152941 |
T |
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