View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_high_29 (Length: 253)
Name: NF3252_high_29
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 45984495 - 45984258
Alignment:
| Q |
1 |
cttagttatgaattgtgtatcgttagttcataagcaagacaaatgaagataaaagatattggttctcccatcaagcaacaaagacatgatcaatatcaga |
100 |
Q |
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| T |
45984495 |
cttagttatgaactgtgtat-gtttgttcataagtaagacaaatgaagataaaagatattggttctcccatcaagcaacaaagacatgatcaatatcaga |
45984397 |
T |
|
| Q |
101 |
tggtttttcattcaacaatgaaatatgatccttgaaaatggttgaaattatcatcaagtttggggtagttaaggtatcgggggactgcgagattaacgtg |
200 |
Q |
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|| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45984396 |
tgatttttcattcttcaatgaaatatgatccttgaaa-tggttgaaattatcatcaagtttggggtagttaaggtatcgggggactgcgagtttaacgtg |
45984298 |
T |
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| Q |
201 |
aaagtatgtacctaggtctaaacctcgacctcactctctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
45984297 |
aaagtatgtacctaggtctaaacctcgacctcactctctg |
45984258 |
T |
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