View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_high_34 (Length: 243)
Name: NF3252_high_34
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_high_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 44883758 - 44883516
Alignment:
| Q |
1 |
cttcaattctgcctcattaagtggatctccatcaatctccctcctcttagaaataacatttaaaagctcatctgcaaaggtcttagagttctccatgcct |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44883758 |
cttcaactctgcctcattaagtggatctccatcaatctccctcctcttagaaataacatttaaaagctcatctgcaaaggtcttagagttcttcatgcct |
44883659 |
T |
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| Q |
101 |
acatcaaaatccaaaaacatcctcacaaaatgcttacatagaccttgtttaaataatagtataagcccttatatataactagtgcggatggagagaggga |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44883658 |
acatcaaaatccaaaaacatcctcacagaatgcttacatagaccttgtttaaataatagtataagcccttatatataactagtgctgatggagagaggga |
44883559 |
T |
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| Q |
201 |
gaggcaagtctcatagttcccccaagtatatggattcatttca |
243 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44883558 |
caggcaagtctcatagttcccccaactatatggattcatttca |
44883516 |
T |
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