View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_high_6 (Length: 450)
Name: NF3252_high_6
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 48754939 - 48754516
Alignment:
| Q |
11 |
cacagaataagaaaacaaataccgtcagaggaaaggaaattacaatggggagaatatgagggtaacctcatgtgcaagaaagaaataaaaaacaagaagt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
48754939 |
cacaaaataagaaaacaaataccgtcagaggaaaggaaattacaatggggagaatatgagggtaacctcatgtgtaagaaagaaataaaaaacaagaaat |
48754840 |
T |
|
| Q |
111 |
gtagtaagaccgtccaatactttcggcatataaaaaacggtttttaaacaaaaccttagaacttcgaaaaagcaccaatgacacgctaagacaattcatg |
210 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48754839 |
gtagtaagaccgtccaatacgttcgacatataaaaaacggtttttaaacaaaaccttagaacttcgaaaaagcaccaatgacacgctaagacaattcatg |
48754740 |
T |
|
| Q |
211 |
tctcagatcaaggttaatgttattggtttcacccaaaaaataataataatgtttaatgagccccagttaaagatgaggcatgtatacacaacaatgccta |
310 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48754739 |
tctcagatcaaggttaatgttaatggtttcacccaaaaaataataataatgtttaatgagccccagttaaagatgaggcatgtatacacaacaatgccta |
48754640 |
T |
|
| Q |
311 |
agtgactaagtagatgtgaaaggtaaaaatatgcaatataattcaataagaacatcaaaattagcaaaaatatgcaaaatggcaatgaggtatagctcag |
410 |
Q |
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| T |
48754639 |
agtgactaagtagatgtgaaaggtaaaaatatgcaatataattcaataagaacatcaaaattagcaaaaatatgcaaaatggcaatgaggtatagctcag |
48754540 |
T |
|
| Q |
411 |
aaacaagtgttccgatgcatatat |
434 |
Q |
| |
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| T |
48754539 |
aaacaagtgttccgatgcatatat |
48754516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 40733001 - 40733160
Alignment:
| Q |
265 |
aatgagccccagttaaagatgaggcatgtatacaca--acaatgcctaagtgactaagtaga--tgtgaaaggtaaaaatatgcaatataattcaataag |
360 |
Q |
| |
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||||||||||| ||||||| ||||| || ||||||| ||||| ||||| |||| ||||||| ||||||||| ||||| ||| || | ||| ||||| |
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| T |
40733001 |
aatgagccccatttaaagacgaggcctggatacacacaacaatacctaattgacaaagtagagatgtgaaagg-aaaaacatgaaacagaatctaataaa |
40733099 |
T |
|
| Q |
361 |
aacatcaaaattagcaaaaatatgcaaaatggcaatgaggtatagctcagaaacaagtgtt |
421 |
Q |
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| T |
40733100 |
aacatcaaaagtagcaaaaagatgcaaaatggtgacaaaatatagctcagaaccaagtgtt |
40733160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 48753727 - 48753667
Alignment:
| Q |
328 |
gaaaggtaaaaatatgcaatataattcaataagaacatcaaaattagcaaaaatatgcaaa |
388 |
Q |
| |
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| T |
48753727 |
gaaaggtaaaaatatgcaatcgagtccaataagaacatcataagtaacaaaaatatgcaaa |
48753667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 434
Target Start/End: Original strand, 52090699 - 52091112
Alignment:
| Q |
16 |
aataagaaaacaaataccgtcagaggaaaggaaattacaatggggagaatatgagggtaacctcatgtgcaagaaagaaataaaaaacaagaagtgtagt |
115 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||| |||||| | ||||||||| ||||| | |||||||| | ||||||||||| ||||| |
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| T |
52090699 |
aataagaaaacaaatactgtcagagggaaggaaattacaatgaggagaacacgagggtaacatcatgcg--agaaagaatttaaaaacaagaaatgtaga |
52090796 |
T |
|
| Q |
116 |
aagaccgtccaatactttcggcatataaaaaacggtttttaaacaaaaccttagaacttcgaaaaagcaccaatgacacgctaagacaattcatgtctca |
215 |
Q |
| |
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||||||||||||||||| |||| |||||||| || ||||||||||||||||| ||| | |||||||||||||||||| ||||| ||||| ||||||||| |
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| T |
52090797 |
aagaccgtccaatactt-cggcgtataaaaat-ggcttttaaacaaaaccttaaaacattgaaaaagcaccaatgacatgctaaaacaatccatgtctca |
52090894 |
T |
|
| Q |
216 |
gatcaaggttaatgttat-tggtttcacccaaaaaataataataatgtttaatgagccccagttaaagatgaggcatgtatacacaacaatgcctaagtg |
314 |
Q |
| |
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||||||||||||||||| |||||||||||||| | || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
52090895 |
gatcaaggttaatgttaaatggtttcacccaaagagaaa--ataatgtttaatgagccccatttaaaaatgaggcatgtatacacaacaatgcctaagtg |
52090992 |
T |
|
| Q |
315 |
actaagta-gatgtgaaaggtaaaaatatgcaatataattcaataagaacatcaaaattagcaaaaatatgcaaaatggcaatgaggtatagctcagaaa |
413 |
Q |
| |
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|||||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| || |
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| T |
52090993 |
actaagtaggatatgaaaggtaaaaatatacaatagaattcaataagaacatcaaaattagcaaaaatatgcaaaatggtgatg-ggtacagctcgtaac |
52091091 |
T |
|
| Q |
414 |
caagtgttccgatgcatatat |
434 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
52091092 |
caagtgttacgatgcatatat |
52091112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 52091907 - 52091971
Alignment:
| Q |
328 |
gaaaggtaaaaatatgcaatataattcaataagaacatcaaaattagcaaaaatatgcaaaatgg |
392 |
Q |
| |
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|||||||||||||||||||| | | |||||||||||||| || | ||||||||| |||||||| |
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| T |
52091907 |
gaaaggtaaaaatatgcaatcgagtccaataagaacatcataagcaacaaaaatatacaaaatgg |
52091971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 417
Target Start/End: Complemental strand, 38462980 - 38462869
Alignment:
| Q |
307 |
cctaagtgactaagtagatgtgaaaggtaaaaa-tatgcaatataattcaataagaacatcaaaattagcaaaaatatgcaaaatggcaatgaggtatag |
405 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||| |||||||| ||| || ||| ||| |||||||||| | ||||||||||||| | || |||||||| |
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| T |
38462980 |
cctaagtgaccaagtacgtatgaaaggtaaaaaatatgcaatgaaatccagtaaaaacgtcaaaattagtataaatatgcaaaatagtgataaggtatag |
38462881 |
T |
|
| Q |
406 |
ctcagaaacaag |
417 |
Q |
| |
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||||||| |||| |
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| T |
38462880 |
ctcagaaccaag |
38462869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 38463245 - 38463172
Alignment:
| Q |
22 |
aaaacaaataccgtcagaggaaaggaaattacaatggggagaatatgagggtaacctcatgtgcaagaaagaaa |
95 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||||||| ||||||||| | ||| ||| ||||||||||| |
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|
| T |
38463245 |
aaaactaatactgtcagagagaaggaaattacaatggggaggatatgagggcatccttgtgttcaagaaagaaa |
38463172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 228
Target Start/End: Complemental strand, 38463142 - 38463009
Alignment:
| Q |
97 |
aaaaaacaagaagtgtagtaagaccgtccaatactttcggcatataaaaaacggttttta---aacaaaaccttagaacttcgaaaaagcaccaatgaca |
193 |
Q |
| |
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|||||||||||| || || |||||||| |||||| |||||| ||||||||| |||||| | |||| | ||||| ||||||||| ||||||||| || | |
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| T |
38463142 |
aaaaaacaagaaatgaagaaagaccgttcaatac-ttcggcttataaaaaatggttttaacacaacacagccttaaaacttcgaacaagcaccaaagata |
38463044 |
T |
|
| Q |
194 |
cgctaagacaattcatgtctcagatcaaggttaat |
228 |
Q |
| |
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||||| |||| ||||| |||| | ||| |||||| |
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|
| T |
38463043 |
tgctaaaacaaatcatgcctcaaaccaaagttaat |
38463009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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