View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3252_high_9 (Length: 405)

Name: NF3252_high_9
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3252_high_9
NF3252_high_9
[»] chr6 (1 HSPs)
chr6 (8-388)||(16856015-16856393)
[»] chr7 (1 HSPs)
chr7 (16-388)||(47933519-47933889)
[»] chr3 (3 HSPs)
chr3 (16-388)||(54946321-54946691)
chr3 (8-224)||(5885304-5885520)
chr3 (302-374)||(5885517-5885589)
[»] scaffold0182 (1 HSPs)
scaffold0182 (36-388)||(11129-11492)
[»] chr4 (4 HSPs)
chr4 (8-222)||(43942417-43942633)
chr4 (238-388)||(43942222-43942372)
chr4 (8-156)||(2501214-2501361)
chr4 (320-388)||(2501722-2501787)
[»] scaffold0713 (2 HSPs)
scaffold0713 (302-388)||(7459-7545)
scaffold0713 (156-224)||(7542-7610)
[»] chr2 (2 HSPs)
chr2 (79-156)||(26231055-26231132)
chr2 (16-59)||(26230961-26231004)


Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 16856393 - 16856015
Alignment:
Q  8 gagcagagaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaggcgaaatatggatgagttaaaatgtaacatctttttaacctttatg 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||    
T  16856393 gagcagaaaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaagagaaatatggatgagctaaaatgtaacatctttttaacctttatg 16856294  T
Q  108 tggaagaatgtaaacagacaaattcaatggtgatggtgtaaatattataacaaataattaatgtttttaaaaaatagtagttgaaggggttataagaatg 207  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16856293 tggaagaatgtaaacagacaaattcaatggcgatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatg 16856194  T
Q  208 aaggatgtaaaagttctgnnnnnnnnnnnnaattaaaataataatgttcagttacatttggttaacattgatgtgtatattcctattcaattacttcttt 307  Q
    ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16856193 aaggatgtaaaagttctg--ttttttttttaattaaaataataatgttcagttacatttggttaacattgatgtgtatattcctattcaattacttcttt 16856096  T
Q  308 cttattaagattgcaattgatcagtgtaactctttttatcaaaattattatgtataatggtttgaaggagtgacacataag 388  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16856095 cttattaagattgcaattgattagtgtaactctttttatcaaaattattatgtataatggtttgaaggagtgacacataag 16856015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 47933519 - 47933889
Alignment:
Q  16 aaggaatgagatttgcgttggttatcatataggtgaaagggaaaaggcgaaatatggatgagttaaaatgtaacatctttttaacctttatgtggaagaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47933519 aaggaatgagatttgcgttggttatcatataggtgaaagggaaaaagggaaatatggatgagttaaaatgtaacatctttttaacctttatgtggaagaa 47933618  T
Q  116 tgtaaacagacaaattcaatggtgatggtgtaaatattataacaaataattaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgt 215  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47933619 tgtaaacagacaaattcaatggtgatggtgtaaatatta-aacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaacgaaggatgt 47933717  T
Q  216 aaaagttctgnnnnnnnnnnnnaattaaaataataatgttcagttacatttggttaacattgatgtgtatattcctattcaattacttctttcttattaa 315  Q
    ||||||||||            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47933718 aaaagttctg-tttttttttttaattaaaataataatgttcagttacatttggttaacattgatgtgcatattcctattcaattacttctttcttattaa 47933816  T
Q  316 gattgcaattgatcagtgtaactctttttatcaaaattattatgtataatggtttgaaggagtgacacataag 388  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47933817 gattgcaattgattagtataactctttttatcaaaattattatgtataatggtttgaaggagtgacacataag 47933889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 54946321 - 54946691
Alignment:
Q  16 aaggaatgagatttgcgttggttatcatataggtgaaagggaaaaggcgaaatatggatgagttaaaatgtaacatctttttaacctttatgtggaagaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54946321 aaggaatgagatttgcgttggttatcatataggtgaaagggaaaaagggaaatatggatgagttaaaatgtaacatctttttaacctttatgtggaagaa 54946420  T
Q  116 tgtaaacagacaaattcaatggtgatggtgtaaatattataacaaataattaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgt 215  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54946421 tgtaaacagacaaattcaatggtgatggtgtaaatatta-aacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaacgaaggatgt 54946519  T
Q  216 aaaagttctgnnnnnnnnnnnnaattaaaataataatgttcagttacatttggttaacattgatgtgtatattcctattcaattacttctttcttattaa 315  Q
    ||||||||||            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  54946520 aaaagttctg-tttttttttttaattaaaataataatgttcagttacatttggttaacattgatgtgcatattcctattcaattacttctttcttattaa 54946618  T
Q  316 gattgcaattgatcagtgtaactctttttatcaaaattattatgtataatggtttgaaggagtgacacataag 388  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54946619 gattgcaattgattagtataactctttttatcaaaattattatgtataatggtttgaaggagtgacacataag 54946691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 5885304 - 5885520
Alignment:
Q  8 gagcagagaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaggcgaaatatggatgagttaaaatgtaacatctttttaacctttatg 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||    
T  5885304 gagcagaaaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaagggaaatatggatgagctaaaatgtaacatctttttaacctttatg 5885403  T
Q  108 tggaagaatgtaaacagacaaattcaatggtgatggtgtaaatattataacaaataattaatgtttttaaaaaatagtagttgaaggggttataagaatg 207  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5885404 tggaagaatgtaaacagacaaattcaatggagatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatg 5885503  T
Q  208 aaggatgtaaaagttct 224  Q
    |||||||||||||||||    
T  5885504 aaggatgtaaaagttct 5885520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 302 - 374
Target Start/End: Original strand, 5885517 - 5885589
Alignment:
Q  302 ttctttcttattaagattgcaattgatcagtgtaactctttttatcaaaattattatgtataatggtttgaag 374  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  5885517 ttctttcttattaagattgcaattgattagtgtaactctttttatcaaaattattatgtataatggcttgaag 5885589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 36 - 388
Target Start/End: Original strand, 11129 - 11492
Alignment:
Q  36 gttatcatataggtgaaagggaaaaggcgaaatatggatgagttaaaatgtaacatctttttaacctttatgtggaagaatgtaaacagacaaattcaat 135  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11129 gttatcatataggtgaaagggaaaaagggaaatatggatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaacagacaaattcaat 11228  T
Q  136 ggtgatggtgtaaatattataacaaataattaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttctgnnnnnnnnnn 235  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  11229 ggtgatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttctg-ttttttttt 11327  T
Q  236 nnaattaaaataataatgttcagttacatttggttaacattgatgtgtatattcctatt-caatta-----cttctttcttattaagattgcaattgatc 329  Q
      ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  || ||      |||||||||||||||||||||||||||     
T  11328 ttaattaaaataataatgttcagttacatttggttaacattaatgtgtatattcctattaaaaataataatgttctttcttattaagattgcaattgatt 11427  T
Q  330 agtgtaactc------tttttatcaaaattattatgtataatggtttgaaggagtgacacataag 388  Q
    | ||||||||      |||||||||||| ||| ||||||||||| |||| | |||||||||||||    
T  11428 attgtaactctttttatttttatcaaaactatgatgtataatggattgaggaagtgacacataag 11492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 43942633 - 43942417
Alignment:
Q  8 gagcagagaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaggcgaaatatggatgagttaaaatgtaacatctttttaacctttatg 107  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||  ||||||||||||||||||||||||||||     
T  43942633 gagcagaaaaggaatgagatttgcgttggttatcatgtaggtgaaagggaaaaagggaaatatggatgatctaaaatgtaacatctttttaacctttata 43942534  T
Q  108 tggaagaatgtaaacagacaaattcaatggtgatggtgtaaatat--tataacaaataattaatgtttttaaaaaatagtagttgaaggggttataagaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  43942533 tggaagaatgtaaacagacaaattcaatggtgatggtgtaaatattatataacaaataatcaatgtttttaaaaaatagtagttgaaggagttataagaa 43942434  T
Q  206 tgaaggatgtaaaagtt 222  Q
    |||||||||||||||||    
T  43942433 tgaaggatgtaaaagtt 43942417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 238 - 388
Target Start/End: Complemental strand, 43942372 - 43942222
Alignment:
Q  238 aattaaaataataatgttcagttacatttggttaacattgatgtgtatattcctattcaattacttctttcttattaagattgcaattgatcagtgtaac 337  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  43942372 aattaaaataataatgttcagttacacttggttaacattgatgtgtatattcctattcaattagttctttcttattaaggttgcaattgattagtgtaac 43942273  T
Q  338 tctttttatcaaaattattatgtataatggtttgaaggagtgacacataag 388  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43942272 tctttttatcaaaattattatgtataatggtttgagggagtgacacataag 43942222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 2501214 - 2501361
Alignment:
Q  8 gagcagagaaggaatgagatttgcgttggttatcatataggtgaaagggaaaaggcgaaatatggatgagttaaaatgtaacatctttttaacctttatg 107  Q
    ||||||| ||||||||||||| | || | |||| ||||||||||||||||||| |  ||||   |||||  ||||||||||||||||||||| |||||||    
T  2501214 gagcagaaaaggaatgagattagtgt-gattattatataggtgaaagggaaaaaggaaaattaagatgatctaaaatgtaacatctttttaagctttatg 2501312  T
Q  108 tggaagaatgtaaacagacaaattcaatggtgatggtgtaaatattata 156  Q
    || ||||||||||||||||| |||||||| |||||||||||||||||||    
T  2501313 tgaaagaatgtaaacagacacattcaatgatgatggtgtaaatattata 2501361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 2501722 - 2501787
Alignment:
Q  320 gcaattgatcagtgtaactctttttatcaaaattattatgtataatggtttgaaggagtgacacataag 388  Q
    ||||| ||| |||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||    
T  2501722 gcaatagattagtgtaactctttttatcaaaatta---tgtataatggtttgagggagtgacacataag 2501787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 7545 - 7459
Alignment:
Q  302 ttctttcttattaagattgcaattgatcagtgtaactctttttatcaaaattattatgtataatggtttgaaggagtgacacataag 388  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  7545 ttctttcttattaagattgcaattgattagtgtaactctttttatcaaaagtattatgtataatggcttgaaggagtgacacataag 7459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 7610 - 7542
Alignment:
Q  156 aacaaataattaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttct 224  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7610 aacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttct 7542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 26231055 - 26231132
Alignment:
Q  79 taaaatgtaacatctttttaacctttatgtggaagaatgtaaacagacaaattcaatggtgatggtgtaaatattata 156  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| ||| || ||||| |||||||||||||| ||||    
T  26231055 taaaatgtaacatctctttaagctttatgtggaagaatgtaaacatacacatccaatgatgatggtgtaaataatata 26231132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 26230961 - 26231004
Alignment:
Q  16 aaggaatgagatttgcgttggttatcatataggtgaaagggaaa 59  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||    
T  26230961 aaggaatgagattagtgttggttattatataggtgaaagggaaa 26231004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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