View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_low_10 (Length: 404)
Name: NF3252_low_10
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 1206557 - 1206313
Alignment:
| Q |
8 |
aaacatgtgtttcatgaggataagaggggaaactatgatgaatttgtgaaagacataaatgatttcaagacctgcatgaatgattatcaaatcatcatat |
107 |
Q |
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| T |
1206557 |
aaacatgtgtttcatgaggataagaggggaaactatgatgaatttgtgaaagacataaatgatttcaagacctgcatgaatgattatcaaatcatcatat |
1206458 |
T |
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| Q |
108 |
ttcaagttcaagaattcaaagaaagggcgaatgaggtacttaaaggcataaacatttaggattcaatgcctacatgaagcgttatcacatcagactgcca |
207 |
Q |
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| T |
1206457 |
ttcaagttcaagaattcaaacaaagggcgaatgaggtacttaaaggcataaacatttaggattcaacgcctacatgaagcgttatcacatcagactgcca |
1206358 |
T |
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| Q |
208 |
attccagcggatgatgaacaacaagatcatgattctggttggtgg |
252 |
Q |
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| T |
1206357 |
attccagcggatgatgaacaacaagatcatgattctggttggtgg |
1206313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 313 - 388
Target Start/End: Complemental strand, 1206251 - 1206176
Alignment:
| Q |
313 |
cttcacatattttgataacttatgatagaaatatatttcttgtaaaactgatagttgctattaaaataggggttat |
388 |
Q |
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| T |
1206251 |
cttcacatattttgataacttatgatagaaatatatttcttgtaaaactgatagttgctattaaaataggggttat |
1206176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 30865417 - 30865206
Alignment:
| Q |
13 |
tgtgtttcatgaggataagaggggaaactatgatgaatttgtgaaagacataaatgatttcaagacctgcat---gaatgattatcaaatcatcatattt |
109 |
Q |
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| T |
30865417 |
tgtgtttcatgatgataagagtggaaagtatgatgggtttatgaaagacatagatgatttcaagacctgcatgaagaatgatcatcaaatcatcatactt |
30865318 |
T |
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| Q |
110 |
caagttcaagaattcaaagaaagggcgaatgaggtacttaaagg-cataaacattta------ggattcaatgcctacatgaagcgttatcacatcagac |
202 |
Q |
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| T |
30865317 |
ccagttcaagaattctaacaaaaggtgaatgatgtactcaaaggccagaaacatttaatcttgggattcaacacctacatgaagcattatcgaatcagac |
30865218 |
T |
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| Q |
203 |
tgccaattccag |
214 |
Q |
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| T |
30865217 |
tgccaatcccag |
30865206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 41 - 231
Target Start/End: Original strand, 3045579 - 3045776
Alignment:
| Q |
41 |
tatgatgaatttgtgaaagacataaatgatttcaagacctgcatgaatgattatcaaatcatcatatttcaagttcaagaattcaaagaaagggcgaatg |
140 |
Q |
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| T |
3045579 |
tatgatgagtttataaaagccatagatgatttcaagacctgcatgaaggatcatcatccaatcgtacttccagttcaagagttcaaagaaagggtgaacg |
3045678 |
T |
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| Q |
141 |
aggtacttaaa-ggcataaaca------tttaggattcaatgcctacatgaagcgttatcacatcagactgccaattccagcggatgatgaacaacaa |
231 |
Q |
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| T |
3045679 |
aggtacttaaagggcataaatatttaattttaggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgataatcaacaa |
3045776 |
T |
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