View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3252_low_12 (Length: 396)
Name: NF3252_low_12
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 13829926 - 13830060
Alignment:
| Q |
19 |
gtcattcccttgttggttatttgggccataagtagacaaaaacctgacctattccttgaggtataatattctactcttccttgtttgaaatatatttgtg |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
13829926 |
gtcattcccttgttggttatttgggctgtaagtagacaaaaacctgacctattcctcgaggtatgatattctacttttccttgtttgaaatatatttgtg |
13830025 |
T |
|
| Q |
119 |
tttgatgtaatattacaggtatctaataatttgga |
153 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13830026 |
tttgatgtaatattacatgtatctaataatttgga |
13830060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 13830255 - 13830334
Alignment:
| Q |
311 |
atgatgcaaaatatgcacatttacctgatgaagtttaaggtcgattttcttcaatataagtggtattcctcctttgtttc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13830255 |
atgatgcaaaatatgcacatttacctgatgaagtttaaggtcaattttcttcaatataagtggtattcctcctttgtttc |
13830334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 13830150 - 13830230
Alignment:
| Q |
204 |
caaagcaaaatacaaattaagtgaaatttcacttc-nnnnnnnccccaataa-tatatgtgacattcaatcttctgtttag |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
13830150 |
caaagcaaaatacaaattaagtgaaatttcacttcttttttttccccaataattatatgtgacatccaatcttctgtttag |
13830230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University