View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_low_14 (Length: 333)
Name: NF3252_low_14
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 41805635 - 41805943
Alignment:
| Q |
18 |
gattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgccggggccagagagcaatgtgaacccatctatannnnnnnnat |
117 |
Q |
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| T |
41805635 |
gattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgccggggccagagagcagtgtgaacccatctatattttttttat |
41805734 |
T |
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| Q |
118 |
gcaactttgtccaattaggtactgtcgtgatttgacaaacatgagtatgtgtatagttatannnnnnnccctgtatca------aagttagttctgttct |
211 |
Q |
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| T |
41805735 |
gcaactttgtccaattaggtactgtcgtgatttgacaaacatgagtatgtgtatagttatatttttttccctgtatcagtagcaaagttagttctgttct |
41805834 |
T |
|
| Q |
212 |
tctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgttgggttaacatgtcccactatcaaaattttccagttct |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41805835 |
tctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgctgggttaacatgtcccactatcaaaattttccagttct |
41805934 |
T |
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| Q |
312 |
tacccgtct |
320 |
Q |
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||||||||| |
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| T |
41805935 |
tacccgtct |
41805943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 197 - 320
Target Start/End: Original strand, 41799488 - 41799611
Alignment:
| Q |
197 |
agttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgttgggttaacatgtcccactatca |
296 |
Q |
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| T |
41799488 |
agttagtcctgttcttctcttgaatttgaattgaataatcttagtgaggtcttattgttttgttcagtatacaaatttggatgaacatgtcccattatta |
41799587 |
T |
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| Q |
297 |
aaattttccagttcttacccgtct |
320 |
Q |
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| T |
41799588 |
aattttgccaattcttacccgtct |
41799611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 41799249 - 41799321
Alignment:
| Q |
18 |
gattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgccggggccagagagca |
90 |
Q |
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||||||||||||| | ||| | | |||| ||| |||||| ||||||||||||| ||| |||||||||||||| |
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| T |
41799249 |
gattgattatcaccgtgagagtagtgaccgtctcaaggaaatcatatcaaagacacgcaggggccagagagca |
41799321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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