View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_low_18 (Length: 321)
Name: NF3252_low_18
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 1876433 - 1876732
Alignment:
| Q |
14 |
tgcaattaaaattggagtgcagtttgttgtcgacttatctttcattttggtctacttttttatgtgtattattttaaagattgatttgtattgaaattgc |
113 |
Q |
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| T |
1876433 |
tgcaattaaaattggagcgcagtttgttgtcgacttatctttcattttggtctacttttttatgtgtattattttaaagattgatttgtattgaaattgc |
1876532 |
T |
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| Q |
114 |
gaactacattagtttgtaatgtcctgcaatattaaaaacacgctaatgcaatgtatctgcaaccgcaatttaaaactatgatatattcggaaatgtttta |
213 |
Q |
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| T |
1876533 |
gaactacattagtttgtaatgtcctgcaatattaaaaacacgctaatgcaatgtatctgcaaccgcaatttaaaactatgatatattcggaaatgttcta |
1876632 |
T |
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| Q |
214 |
tttatcaattttccctttgttagtaatgtctacagttggtaggaattatttcaattctgttggcttttgctcctgggccatgcatacattgttgtctgtg |
313 |
Q |
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| T |
1876633 |
tttatcaattttccctttgttagtaatgtctacagttggtaggaattatttcaattctgttggcttttgctcctgggccatgcatacattgttgtctgtg |
1876732 |
T |
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