View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_low_2 (Length: 745)
Name: NF3252_low_2
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 690; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 1 - 743
Target Start/End: Complemental strand, 42687294 - 42686546
Alignment:
| Q |
1 |
tgatttcgatagggctacttgccctacttctcgaagatctgtcacaggatactgcgtcttcttgggtgacactcatttcatggtgttcaaagaagcaagc |
100 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42687294 |
tgattccgatagggctacctgccctacttctcgaagatctgtcacaggatactgcatcttcttgggtgacactcatttcatggtgttcaaagaagcaagc |
42687195 |
T |
|
| Q |
101 |
aattgtatctcattgctcaacagaagctgaataacgtgctctcgctgccagtctaggttacagtgtctgacttatttacttaga------caggttgctt |
194 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42687194 |
aattgtatctcattgctcaacagaagctgaatatcgtgctctcgctgccagtctaggttacagtgtctgacttatttacttagagatcttcaggttgctt |
42687095 |
T |
|
| Q |
195 |
ccattactccagcttttctatactgtgacggcaaattcacctgtcatattgctgcaaattcaacctttcacgagcctattgagcatattgaaatcggttg |
294 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42687094 |
ccattactccagcttttctgtactgtgacggcaaattcacctgtcatattgctgcaaattcaacctttcacgagcctattgagcatattgaaatcggttg |
42686995 |
T |
|
| Q |
295 |
tcacattgttcgtgagaaactccaaacaaaactctttcgactaatgcacatctcaagcaaagatcaattagcggctacttttacaaaacctcttgatcct |
394 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686994 |
tcacaatgttcgcgagaaactccaaacaaaactctttcgactaatgcacatctcaagcaaagatcaattagcggctacttttacaaaacctcttgatcct |
42686895 |
T |
|
| Q |
395 |
caacattttcattctctcctttccaaattccaaaccaggaattattgacatacactctccacattgtgagggtattagataaataagtttgttgtatact |
494 |
Q |
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| T |
42686894 |
caacattttcattctctcctttccaaattccaaaccaggaattattgacatacactctccaccttgtgagggtattagataaataagtttgttgtatact |
42686795 |
T |
|
| Q |
495 |
ttaccttgggttagttagtttgattggttagcttagttaattgtttagcctaaccctatgatttatttcttgatcttgggttagttagtttacttagtct |
594 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686794 |
ttaccttgggttagttagtttgattggttagcttagttaattgtttagcctaaccctatgatttatttcttgatcttgggttagttagtttacttagtct |
42686695 |
T |
|
| Q |
595 |
gttaggttagtcagtgctttagcctataccctatgttctctatcaatgactaagggatttctttgttattcatgtcaaggttttactctgttatacacat |
694 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686694 |
gttaggttagtcagtgctttagcctataccctatgttctctatcaatgattaagggatttctttgttattcatgtcaaggttttactctgttatacacat |
42686595 |
T |
|
| Q |
695 |
cactatagtatgcatcaaattaaacgaggccaccaacctggattatgat |
743 |
Q |
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| T |
42686594 |
cactatagtatgcatcaaattaaacgaggccaccaacctggattatgat |
42686546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 465 - 580
Target Start/End: Complemental strand, 42688074 - 42687955
Alignment:
| Q |
465 |
ggtattagataaataagtttgttgtatactttaccttgggttagt----tagtttgattggttagcttagttaattgtttagcctaaccctatgatttat |
560 |
Q |
| |
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|||||||||||||||| | || ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| |||| |||| ||| |
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| T |
42688074 |
ggtattagataaataattctgccctatactttaccttgggttagtaagttagtttgcttggttagcttagttagttgtttagcctagccctctgatgtat |
42687975 |
T |
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| Q |
561 |
ttcttgatcttgggttagtt |
580 |
Q |
| |
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|| ||||||||||||||||| |
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| T |
42687974 |
tttttgatcttgggttagtt |
42687955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 689
Target Start/End: Complemental strand, 42687919 - 42687848
Alignment:
| Q |
619 |
tataccctatgttctctatcaatg-actaagggatttctttgttattcatgtcaaggttttactctgttata |
689 |
Q |
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||||| ||||||||||||| ||| | |||||||||||||||| |||||| ||||||||| |||||||||| |
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| T |
42687919 |
tatactctatgttctctattgatggattaagggatttctttgtaattcatatcaaggtttccctctgttata |
42687848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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