View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3252_low_21 (Length: 306)

Name: NF3252_low_21
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3252_low_21
NF3252_low_21
[»] chr5 (1 HSPs)
chr5 (1-287)||(42333270-42333554)
[»] chr2 (4 HSPs)
chr2 (3-256)||(29060360-29060612)
chr2 (138-242)||(5539467-5539571)
chr2 (146-205)||(18697279-18697338)
chr2 (138-203)||(32487786-32487851)
[»] chr6 (4 HSPs)
chr6 (59-277)||(9856644-9856862)
chr6 (138-204)||(28591028-28591094)
chr6 (145-205)||(9312787-9312847)
chr6 (138-203)||(14392736-14392801)
[»] chr3 (1 HSPs)
chr3 (20-281)||(33335306-33335567)
[»] chr7 (4 HSPs)
chr7 (78-202)||(13760487-13760611)
chr7 (180-254)||(40055984-40056058)
chr7 (79-191)||(47801115-47801227)
chr7 (159-218)||(1717991-1718050)
[»] chr1 (1 HSPs)
chr1 (92-205)||(16587155-16587268)
[»] chr4 (2 HSPs)
chr4 (162-206)||(55431910-55431954)
chr4 (138-206)||(54846001-54846069)
[»] scaffold1185 (1 HSPs)
scaffold1185 (144-202)||(1691-1749)
[»] chr8 (1 HSPs)
chr8 (149-206)||(29935928-29935985)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 42333554 - 42333270
Alignment:
Q  1 gaagtgttcttttttattaacatatcattgtgttgcaggatgatgttcacgacactaagaggtggcaattgtatccagttcatgggtactcggtgcggga 100  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  42333554 gaagtgttcttttttattaacatatcattgtgttgcag--tgatgttcacgacactaagaggtggcaattgtatccagttcatgggtacttggtggggga 42333457  T
Q  101 atcctatcggtttattactaataatggtgacatgttagatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtg 200  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||    
T  42333456 atcctattggtttattactaataatggtgacatgttagataggactcttgtcgacgacgtttgacataaatctattcattcaaaggtgtctttgctggtg 42333357  T
Q  201 tggcgtttgctccgtaacaaagttcatacgaaagacaatttgttgcatcgtggagtaatgccttcaactgacacggcttgtttggga 287  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||    
T  42333356 tggcgtttgctccgtaacagagttcctacgaaagacaatttgttgcattgtggagtaatgccttcaactgacatggcttgtgtggga 42333270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 3 - 256
Target Start/End: Complemental strand, 29060612 - 29060360
Alignment:
Q  3 agtgttcttttttattaacatatcattgtgttgcaggatgatgttcacgacactaagaggtggcaattgtatccagttcatgggtactcggtgcgggaat 102  Q
    |||||||| ||||||||| ||| || ||||||||| ||||||||||||||| ||   | |||||||||| ||| ||||||||||||||||||||||||||    
T  29060612 agtgttctcttttattaa-ataacactgtgttgcaagatgatgttcacgactcttgaaagtggcaattggatctagttcatgggtactcggtgcgggaat 29060514  T
Q  103 cctatcggtttattactaataatggtgacatgttagatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtg 202  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||| |  |||||||||||    
T  29060513 cctatcggtttattattaataatggtgacatgttagataggactcttgtcgacgacgtttagcataaatcaattccttgaaaggtattgttgttggtgtg 29060414  T
Q  203 gcgtttgctccgtaacaaagttcatacgaaagacaatttgttgcatcgtggagt 256  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  29060413 gcgtttgctccgtaacagagttcctacgaaagataatttgttgcatcgtggagt 29060360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 5539467 - 5539571
Alignment:
Q  138 gatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgtttgctccgtaacaaagttcatacgaaagaca 237  Q
    |||||||||||||| |||||| | ||||||||   ||||||||||||||||||| |||| ||||||||  | || || |||| | ||| ||| |||||||    
T  5539467 gatatgactcttgttgacgacatctggcataagcatattccttcaaaggtgtctctgtttgtgtggcgcctcctacgcaacagacttcctactaaagaca 5539566  T
Q  238 atttg 242  Q
    |||||    
T  5539567 atttg 5539571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 18697338 - 18697279
Alignment:
Q  146 tcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcg 205  Q
    |||||| |||||| |||||||||||   |||||||||||||||||||||||  |||||||    
T  18697338 tcttgttgacgacatttggcataaaaacattccttcaaaggtgtctttgtttctgtggcg 18697279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 32487851 - 32487786
Alignment:
Q  138 gatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtgg 203  Q
    |||| ||||||||| |||||||| ||||||||   ||||||||||||| ||||| |||| ||||||    
T  32487851 gataggactcttgttgacgacgtctggcataagcatattccttcaaagttgtctctgtttgtgtgg 32487786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 59 - 277
Target Start/End: Complemental strand, 9856862 - 9856644
Alignment:
Q  59 gaggtggcaattgtatccagttcatgggtactcggtgcgggaatcctatcggtttattactaataatggtgacatgttagatatgactcttgtcgacgac 158  Q
    ||||||||| || |||||||||||||||||||| ||| | ||||||| |||||| |||||||||| || ||||||||||||||  | | |||| ||||||    
T  9856862 gaggtggcatttctatccagttcatgggtactcagtgtgtgaatcctgtcggttcattactaatactgctgacatgttagatagaattattgtagacgac 9856763  T
Q  159 gtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgtttgctccgtaacaaagttcatacgaaagacaatttgttgcatcgtggagtaa 258  Q
    ||||| | ||| |  ||||| ||||||||||| |||||||||||||| ||||||||||| | ||||| ||||||||| |||||| ||||||||||| |      
T  9856762 gtttgacgtaagtgaattccgtcaaaggtgtccttgttggtgtggcgcttgctccgtaatagagttcctacgaaagataatttggtgcatcgtggaattt 9856663  T
Q  259 tgccttcaactgacacggc 277  Q
    ||||| |||||||||||||    
T  9856662 tgcctacaactgacacggc 9856644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 28591028 - 28591094
Alignment:
Q  138 gatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggc 204  Q
    |||||||||||||| ||||| ||||||||| ||| ||||  ||||||||||||| |||| |||||||    
T  28591028 gatatgactcttgttgacgatgtttggcatcaatatattatttcaaaggtgtctctgtttgtgtggc 28591094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 9312787 - 9312847
Alignment:
Q  145 ctcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcg 205  Q
    |||| ||||||||| |||| ||||||  |||||| ||||||||||||||||| ||||||||    
T  9312787 ctctagtcgacgacatttgacataaacatattccctcaaaggtgtctttgttcgtgtggcg 9312847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 14392801 - 14392736
Alignment:
Q  138 gatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtgg 203  Q
    |||| ||||||||| ||| |||| || ||||| | ||||||||||||||||||| |||| ||||||    
T  14392801 gataggactcttgttgacaacgtctgacataagtatattccttcaaaggtgtctctgtttgtgtgg 14392736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 33335567 - 33335306
Alignment:
Q  20 acatatcattgtgttgcaggatgatgttcacgacactaagaggtggcaattgtatccagttcatgggtactcggtgcgggaatcctatcggtttattact 119  Q
    ||||| |||||| ||||||||| ||||||||||||||  ||||||||| ||  |||| || ||||||||||||||||||||||||| |||||||||||||    
T  33335567 acataacattgtcttgcaggataatgttcacgacacttggaggtggcatttagatcctgtgcatgggtactcggtgcgggaatcctttcggtttattact 33335468  T
Q  120 aataatggtgacatgttagatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgtttgctccgtaaca 219  Q
    | |   ||||||||| | |||| ||||||||| ||||||||||||||||||  | ||||||||||||||||| | |||||||||||  | || ||||| |    
T  33335467 agttcaggtgacatggtggataagactcttgttgacgacgtttggcataaacatgttccttcaaaggtgtctctattggtgtggcgccttcttcgtaata 33335368  T
Q  220 aagttcatacgaaagacaatttgttgcatcgtggagtaatgccttcaactgacacggcttgt 281  Q
     ||||| ||| ||| |||| |||   |||||||| ||  ||||| ||| |||||||||||||    
T  33335367 gagttcctaccaaaaacaacttgacacatcgtggtgttttgcctacaaatgacacggcttgt 33335306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 13760487 - 13760611
Alignment:
Q  78 gttcatgggtactcggtgcgggaatcctatcggtttattactaataatggtgacatgttagatatgactcttgtcgacgacgtttggcataaatctattc 177  Q
    |||||||| |||||| |||| | ||| ||||| ||||||||||||   ||||| |  || |||||||||||||| |||||||| ||||||||   ||| |    
T  13760487 gttcatggctactcgatgcgaggatcatatcgctttattactaattcaggtgaaactttggatatgactcttgttgacgacgtctggcataagcatatcc 13760586  T
Q  178 cttcaaaggtgtctttgttggtgtg 202  Q
    |||||||||||||| ||||||||||    
T  13760587 cttcaaaggtgtctctgttggtgtg 13760611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 40056058 - 40055984
Alignment:
Q  180 tcaaaggtgtctttgttggtgtggcgtttgctccgtaacaaagttcatacgaaagacaatttgttgcatcgtgga 254  Q
    ||||||||||| ||||||||||| || ||||||| ||| | ||| | |||||||||||||||| |||||||||||    
T  40056058 tcaaaggtgtccttgttggtgtgtcgcttgctccataatagagtccctacgaaagacaatttggtgcatcgtgga 40055984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 47801227 - 47801115
Alignment:
Q  79 ttcatgggtactcggtgcgggaatcctatcggtttattactaataatggtgacatgttagatatgactcttgtcgacgacgtttggcataaatctattcc 178  Q
    ||||||| || || ||| ||||| |||| |||||| ||||| ||   ||||||||| | |||| ||||||||| || ||||| |||||||||  ||| ||    
T  47801227 ttcatggttattcagtgtgggaagcctaccggtttgttactcattcaggtgacatggtggataggactcttgtggatgacgtatggcataaacatatccc 47801128  T
Q  179 ttcaaaggtgtct 191  Q
    |||||||||||||    
T  47801127 ttcaaaggtgtct 47801115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 1717991 - 1718050
Alignment:
Q  159 gtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgtttgctccgtaac 218  Q
    |||||||||||   |||||| |||||||| |||||||||||||||||||| || ||||||    
T  1717991 gtttggcataagcatattccctcaaaggtttctttgttggtgtggcgtttacttcgtaac 1718050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 16587155 - 16587268
Alignment:
Q  92 ggtgcgggaatcctatcggtttattactaataatggtgacatgttagatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtct 191  Q
    |||||||||| | ||||| ||| ||||||| || |||||  |  | |||||||||||||| || ||||| ||||||||   |||||| ||||||||||||    
T  16587155 ggtgcgggaagcatatcgctttcttactaacaacggtgaactagtggatatgactcttgttgatgacgtctggcataagcatattccatcaaaggtgtct 16587254  T
Q  192 ttgttggtgtggcg 205  Q
     |||| ||||||||    
T  16587255 ctgtttgtgtggcg 16587268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 55431910 - 55431954
Alignment:
Q  162 tggcataaatctattccttcaaaggtgtctttgttggtgtggcgt 206  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||    
T  55431910 tggcataaacatatcccttcaaaggtgtctttgttggtgtggcgt 55431954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 54846069 - 54846001
Alignment:
Q  138 gatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgt 206  Q
    ||||||||||| || ||||| || ||||| |||  |||||| | ||||||||||||||| |||||||||    
T  54846069 gatatgactctggttgacgatgtctggcaaaaacatattcccttaaaggtgtctttgtttgtgtggcgt 54846001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1185 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1185
Description:

Target: scaffold1185; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 1691 - 1749
Alignment:
Q  144 actcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtg 202  Q
    |||||||| ||| |||| || ||||| | |||||||||||||||||||||||| |||||    
T  1691 actcttgttgacaacgtctgacataagtatattccttcaaaggtgtctttgtttgtgtg 1749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 29935985 - 29935928
Alignment:
Q  149 tgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgt 206  Q
    |||||| ||||||||||| ||   |||||||||||||||||| ||||| |||||||||    
T  29935985 tgtcgatgacgtttggcacaaggttattccttcaaaggtgtccttgttcgtgtggcgt 29935928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University