View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3252_low_22 (Length: 296)

Name: NF3252_low_22
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3252_low_22
NF3252_low_22
[»] chr3 (43 HSPs)
chr3 (68-296)||(48820508-48820735)
chr3 (45-181)||(36881425-36881561)
chr3 (45-177)||(46694110-46694242)
chr3 (45-178)||(23087930-23088063)
chr3 (45-177)||(13364988-13365120)
chr3 (46-178)||(29375278-29375410)
chr3 (45-177)||(3383221-3383353)
chr3 (45-178)||(19241667-19241800)
chr3 (45-178)||(13703357-13703490)
chr3 (45-177)||(199000-199132)
chr3 (45-162)||(43750281-43750398)
chr3 (45-177)||(18355868-18356000)
chr3 (45-177)||(32834989-32835121)
chr3 (45-151)||(31873889-31873994)
chr3 (45-142)||(48436369-48436466)
chr3 (92-178)||(26783661-26783747)
chr3 (49-167)||(27706999-27707116)
chr3 (45-171)||(48963264-48963390)
chr3 (45-122)||(52009105-52009182)
chr3 (69-171)||(6901730-6901831)
chr3 (45-166)||(54086697-54086818)
chr3 (71-142)||(1455186-1455257)
chr3 (46-140)||(53559648-53559742)
chr3 (46-116)||(37781082-37781152)
chr3 (45-101)||(40228280-40228336)
chr3 (45-101)||(46188911-46188967)
chr3 (45-142)||(24064368-24064462)
chr3 (64-118)||(2154192-2154246)
chr3 (72-120)||(51584442-51584490)
chr3 (45-112)||(44522612-44522679)
chr3 (1-35)||(198948-198982)
chr3 (1-35)||(13364936-13364970)
chr3 (1-35)||(19241818-19241852)
chr3 (1-35)||(23088081-23088115)
chr3 (1-35)||(36881373-36881407)
chr3 (1-35)||(46694260-46694294)
chr3 (45-118)||(23771326-23771399)
chr3 (45-118)||(32980679-32980752)
chr3 (87-136)||(37293595-37293644)
chr3 (45-118)||(43159894-43159967)
chr3 (49-122)||(52805082-52805155)
chr3 (82-118)||(43775561-43775597)
chr3 (82-118)||(51219255-51219291)
[»] chr8 (39 HSPs)
chr8 (45-178)||(2539929-2540062)
chr8 (45-178)||(11174222-11174355)
chr8 (45-177)||(7147058-7147190)
chr8 (45-177)||(40058303-40058435)
chr8 (45-177)||(40918731-40918863)
chr8 (45-178)||(30999523-30999656)
chr8 (45-178)||(43275398-43275531)
chr8 (45-178)||(11646324-11646457)
chr8 (45-178)||(36068225-36068358)
chr8 (45-177)||(37345716-37345848)
chr8 (45-178)||(3585596-3585729)
chr8 (45-178)||(27035140-27035273)
chr8 (46-162)||(20546308-20546424)
chr8 (45-178)||(35866758-35866891)
chr8 (45-142)||(27563902-27563999)
chr8 (53-178)||(28562574-28562699)
chr8 (45-177)||(45400770-45400902)
chr8 (45-177)||(28568063-28568195)
chr8 (45-177)||(28575656-28575788)
chr8 (45-142)||(26628851-26628948)
chr8 (45-141)||(13880991-13881087)
chr8 (68-142)||(10180903-10180977)
chr8 (69-148)||(30906718-30906797)
chr8 (45-101)||(28326734-28326790)
chr8 (45-105)||(39151547-39151607)
chr8 (50-149)||(37510420-37510519)
chr8 (1-35)||(2540081-2540115)
chr8 (1-35)||(3585544-3585578)
chr8 (1-35)||(11174373-11174407)
chr8 (1-35)||(11646475-11646509)
chr8 (1-35)||(30999673-30999707)
chr8 (1-35)||(37345664-37345698)
chr8 (1-35)||(40058453-40058487)
chr8 (1-35)||(40918881-40918915)
chr8 (1-35)||(43275549-43275583)
chr8 (45-118)||(3720719-3720792)
chr8 (89-118)||(32010256-32010285)
chr8 (68-112)||(33751245-33751289)
chr8 (82-118)||(34046890-34046926)
[»] chr6 (25 HSPs)
chr6 (45-178)||(1605723-1605856)
chr6 (45-179)||(13757352-13757486)
chr6 (45-178)||(8626627-8626760)
chr6 (45-178)||(15064694-15064827)
chr6 (45-177)||(4129572-4129703)
chr6 (45-177)||(7761445-7761577)
chr6 (45-177)||(29260337-29260469)
chr6 (45-178)||(17942588-17942721)
chr6 (45-177)||(31559738-31559870)
chr6 (45-170)||(8235770-8235895)
chr6 (45-177)||(30734483-30734615)
chr6 (53-122)||(847831-847900)
chr6 (53-178)||(20398237-20398362)
chr6 (69-178)||(1814762-1814871)
chr6 (48-177)||(3798247-3798376)
chr6 (45-118)||(31244878-31244951)
chr6 (65-112)||(879309-879356)
chr6 (68-142)||(26860932-26861006)
chr6 (45-112)||(29238537-29238604)
chr6 (1-35)||(1605672-1605706)
chr6 (1-35)||(7761392-7761426)
chr6 (1-35)||(8235717-8235751)
chr6 (1-35)||(8626575-8626609)
chr6 (1-35)||(29260285-29260319)
chr6 (1-35)||(30734633-30734667)
[»] chr4 (41 HSPs)
chr4 (45-178)||(21310566-21310699)
chr4 (45-184)||(24706240-24706379)
chr4 (45-178)||(14261189-14261322)
chr4 (45-178)||(22321267-22321400)
chr4 (45-178)||(25704796-25704929)
chr4 (45-177)||(12071705-12071837)
chr4 (45-177)||(40122487-40122619)
chr4 (45-178)||(44568982-44569115)
chr4 (45-176)||(21064906-21065037)
chr4 (45-175)||(21661537-21661667)
chr4 (45-175)||(21670301-21670431)
chr4 (45-167)||(50768007-50768129)
chr4 (45-178)||(20249013-20249146)
chr4 (45-177)||(19692867-19692999)
chr4 (45-177)||(19703452-19703584)
chr4 (45-167)||(18507276-18507398)
chr4 (52-142)||(31892384-31892474)
chr4 (45-170)||(6128956-6129081)
chr4 (83-177)||(50839031-50839125)
chr4 (45-105)||(34324655-34324715)
chr4 (48-183)||(32543627-32543762)
chr4 (1-35)||(14261137-14261171)
chr4 (1-35)||(50767957-50767991)
chr4 (46-142)||(48652370-48652466)
chr4 (45-116)||(1146178-1146249)
chr4 (1-35)||(12071654-12071688)
chr4 (68-122)||(17038355-17038409)
chr4 (1-35)||(21310518-21310552)
chr4 (1-35)||(22321417-22321451)
chr4 (1-35)||(24706397-24706431)
chr4 (1-35)||(25704744-25704778)
chr4 (52-118)||(30939197-30939263)
chr4 (1-35)||(34324732-34324766)
chr4 (45-119)||(38617857-38617931)
chr4 (1-35)||(44568930-44568964)
chr4 (107-183)||(26676564-26676641)
chr4 (71-112)||(53219177-53219218)
chr4 (82-150)||(8735399-8735467)
chr4 (84-148)||(20714349-20714413)
chr4 (82-118)||(53599952-53599988)
chr4 (82-118)||(56576269-56576305)
[»] chr2 (26 HSPs)
chr2 (45-178)||(22388137-22388270)
chr2 (45-178)||(23366934-23367067)
chr2 (1-178)||(3519001-3519185)
chr2 (1-177)||(37673743-37673921)
chr2 (45-178)||(1102646-1102779)
chr2 (45-178)||(39938315-39938448)
chr2 (45-177)||(1646432-1646564)
chr2 (45-177)||(12969740-12969872)
chr2 (68-177)||(40756911-40757020)
chr2 (45-177)||(39561895-39562022)
chr2 (45-171)||(37284525-37284649)
chr2 (52-133)||(28110139-28110220)
chr2 (68-174)||(36447426-36447532)
chr2 (47-170)||(4917908-4918031)
chr2 (84-140)||(19976512-19976568)
chr2 (84-148)||(32838958-32839022)
chr2 (45-116)||(28401396-28401467)
chr2 (45-147)||(34242119-34242221)
chr2 (89-142)||(14779964-14780017)
chr2 (83-122)||(1002786-1002825)
chr2 (1-35)||(1646380-1646414)
chr2 (1-35)||(22388285-22388319)
chr2 (1-35)||(23366882-23366916)
chr2 (1-35)||(39938263-39938297)
chr2 (52-118)||(43077331-43077397)
chr2 (68-112)||(32323698-32323742)
[»] chr1 (34 HSPs)
chr1 (45-178)||(40783656-40783789)
chr1 (45-177)||(321771-321903)
chr1 (45-177)||(23045279-23045411)
chr1 (46-178)||(23526385-23526517)
chr1 (45-177)||(47037852-47037984)
chr1 (45-178)||(284478-284611)
chr1 (48-178)||(33082892-33083022)
chr1 (45-172)||(46771783-46771910)
chr1 (45-171)||(27210961-27211087)
chr1 (46-170)||(40562293-40562416)
chr1 (48-178)||(24771905-24772035)
chr1 (45-148)||(40261314-40261417)
chr1 (45-178)||(51064753-51064886)
chr1 (45-177)||(31003787-31003919)
chr1 (45-140)||(40052501-40052596)
chr1 (45-177)||(18396839-18396971)
chr1 (45-170)||(23166858-23166983)
chr1 (45-177)||(27143014-27143144)
chr1 (46-172)||(14925610-14925734)
chr1 (53-142)||(24876714-24876803)
chr1 (83-149)||(1749457-1749523)
chr1 (45-142)||(34458759-34458856)
chr1 (46-170)||(31061463-31061590)
chr1 (68-178)||(1837826-1837937)
chr1 (45-105)||(3657219-3657279)
chr1 (50-170)||(25929248-25929368)
chr1 (86-141)||(14350510-14350565)
chr1 (1-35)||(284426-284460)
chr1 (1-35)||(23045429-23045463)
chr1 (1-35)||(40783807-40783841)
chr1 (1-35)||(47038002-47038036)
chr1 (139-177)||(51064995-51065033)
chr1 (52-118)||(51613450-51613516)
chr1 (46-110)||(49756678-49756742)
[»] chr5 (30 HSPs)
chr5 (45-177)||(40886610-40886742)
chr5 (45-178)||(10285057-10285189)
chr5 (45-178)||(12806852-12806985)
chr5 (45-178)||(30720491-30720624)
chr5 (45-177)||(36561099-36561231)
chr5 (46-179)||(25773795-25773928)
chr5 (45-178)||(37900622-37900755)
chr5 (45-177)||(25683229-25683361)
chr5 (45-178)||(23097723-23097856)
chr5 (45-175)||(16983402-16983532)
chr5 (45-177)||(734339-734471)
chr5 (45-170)||(11319701-11319826)
chr5 (45-181)||(1056621-1056755)
chr5 (45-171)||(39071027-39071153)
chr5 (45-142)||(16054256-16054353)
chr5 (48-114)||(7277486-7277552)
chr5 (64-142)||(11795318-11795396)
chr5 (48-122)||(11797694-11797768)
chr5 (55-177)||(26168064-26168185)
chr5 (68-148)||(30402991-30403071)
chr5 (63-112)||(12305687-12305736)
chr5 (84-140)||(15629320-15629376)
chr5 (1-35)||(10285207-10285241)
chr5 (1-35)||(12807003-12807037)
chr5 (1-35)||(25773742-25773776)
chr5 (45-118)||(25785928-25786001)
chr5 (71-112)||(33239347-33239388)
chr5 (82-118)||(1297900-1297936)
chr5 (45-121)||(21638914-21638990)
chr5 (82-118)||(42911571-42911607)
[»] chr7 (21 HSPs)
chr7 (45-178)||(27813956-27814089)
chr7 (45-178)||(36453123-36453256)
chr7 (45-181)||(25614349-25614485)
chr7 (45-178)||(47110595-47110728)
chr7 (45-177)||(10981653-10981785)
chr7 (45-178)||(40349107-40349239)
chr7 (48-177)||(16662241-16662370)
chr7 (48-177)||(17636601-17636730)
chr7 (48-142)||(27941019-27941113)
chr7 (45-148)||(3091658-3091761)
chr7 (45-148)||(24456794-24456897)
chr7 (53-119)||(3498813-3498879)
chr7 (45-148)||(7743427-7743530)
chr7 (72-179)||(16360549-16360655)
chr7 (62-112)||(6737252-6737302)
chr7 (45-119)||(8380083-8380157)
chr7 (1-35)||(10981601-10981635)
chr7 (1-35)||(27813904-27813938)
chr7 (1-35)||(47110542-47110576)
chr7 (45-118)||(46563254-46563327)
chr7 (115-183)||(2910853-2910921)
[»] scaffold1770 (1 HSPs)
scaffold1770 (45-177)||(307-438)
[»] scaffold0054 (1 HSPs)
scaffold0054 (48-177)||(45601-45730)
[»] scaffold0062 (1 HSPs)
scaffold0062 (45-157)||(287-399)
[»] scaffold0168 (1 HSPs)
scaffold0168 (45-178)||(7813-7946)
[»] scaffold0343 (1 HSPs)
scaffold0343 (45-167)||(6911-7032)
[»] scaffold0025 (1 HSPs)
scaffold0025 (68-142)||(65200-65274)
[»] scaffold0056 (1 HSPs)
scaffold0056 (48-167)||(71231-71350)
[»] scaffold0076 (1 HSPs)
scaffold0076 (45-181)||(15319-15455)
[»] scaffold0004 (1 HSPs)
scaffold0004 (53-122)||(234332-234399)
[»] scaffold0003 (1 HSPs)
scaffold0003 (45-118)||(252633-252706)
[»] scaffold0009 (1 HSPs)
scaffold0009 (51-118)||(147263-147330)
[»] scaffold1431 (1 HSPs)
scaffold1431 (1-35)||(49-83)
[»] scaffold0939 (1 HSPs)
scaffold0939 (69-142)||(1110-1183)
[»] scaffold0060 (1 HSPs)
scaffold0060 (45-122)||(10887-10964)
[»] scaffold1254 (1 HSPs)
scaffold1254 (84-148)||(1042-1106)
[»] scaffold0419 (1 HSPs)
scaffold0419 (84-148)||(6523-6587)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 68 - 296
Target Start/End: Original strand, 48820508 - 48820735
Alignment:
Q  68 gtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatgggcaagtattatgaaac 167  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  48820508 gtattattgacaaaacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattttttaaaatggacaagtattatgaaac 48820607  T
Q  168 ggagggagtatcttttattttagtatgtattcttttgtatttatttagcaattaatcttattgattgagacattattgtgttatgatttggtcaagtctt 267  Q
    ||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48820608 ggaggaagtat-ttttattttagtatgtattcgtttgtacttatttagcaattaatcttattgattgagacattattgtgttatgatttggtcaagtctt 48820706  T
Q  268 cttattcaatatactaacaatttctttca 296  Q
    |||| ||||||||||||||||||||||||    
T  48820707 cttagtcaatatactaacaatttctttca 48820735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 36881425 - 36881561
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |    
T  36881425 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctct 36881524  T
Q  145 aaaatgggcaagtattatgaaacggagggagtatctt 181  Q
    ||||||| |||||||||||||||||||||||||||||    
T  36881525 aaaatggacaagtattatgaaacggagggagtatctt 36881561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 46694242 - 46694110
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  46694242 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 46694143  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  46694142 aaaatggacaagtattatgaaacggagggagta 46694110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 23088063 - 23087930
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23088063 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattcttt 23087964  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||| | |||||||||||||||||||| |||||    
T  23087963 aaaatcgacaagtattatgaaacggaggaagtat 23087930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 13364988 - 13365120
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |    
T  13364988 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattctct 13365087  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  13365088 aaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 29375278 - 29375410
Alignment:
Q  46 tctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttta 145  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  29375278 tctctacaataaatatgcaagggcattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctcta 29375377  T
Q  146 aaatgggcaagtattatgaaacggagggagtat 178  Q
    |||||| ||||||||||||||||||||||||||    
T  29375378 aaatggacaagtattatgaaacggagggagtat 29375410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 3383221 - 3383353
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  3383221 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 3383320  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||| ||||| | ||||||    
T  3383321 aaaatggacaagtattataaaacgaaaggagta 3383353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 19241800 - 19241667
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |    
T  19241800 ctctctacaataaacatgcaagggtattattgacaagtcaataattaatgttgcattgaaacttaaaagtgacaagtattttgaaacaaaattattctct 19241701  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  19241700 aaaatggacaagtattatgaaacggagggagtat 19241667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 13703357 - 13703490
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||     
T  13703357 ctctctgcaataaatatgcaagggtattattgacaacacaataattaatgttgcattgaaacttgaaagtgacaagtattgtaaaacaaatttattcttc 13703456  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    | ||||| |||||||||||||||||| |||||||    
T  13703457 agaatggacaagtattatgaaacggatggagtat 13703490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 199000 - 199132
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| | |    
T  199000 ctctctacaataaatatgcaagggtattattgacaaaacaataattaatgttgcattgaaacttgaaaatgacaaatattgtgaaacaaaattattttct 199099  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| ||| |||||||||| ||||||||||    
T  199100 aaaatggacaactattatgaaatggagggagta 199132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 45 - 162
Target Start/End: Original strand, 43750281 - 43750398
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||      
T  43750281 ctctcaacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgagaaaccaaattattctaa 43750380  T
Q  145 aaaatgggcaagtattat 162  Q
    ||||||| ||||||||||    
T  43750381 aaaatggacaagtattat 43750398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 18356000 - 18355868
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | ||| |||||||||| ||  ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||     
T  18356000 ctctctacaataaataagtaagggtattattgataaatcaataattaatgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattcttc 18355901  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||| ||||||||||||||||    
T  18355900 aaaatggacaagtattgtgaaacggagggagta 18355868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 32835121 - 32834989
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||||||||| |||||  ||| ||||||||||||| |||||| ||||||||||||||||| |||||| ||||||||| | |||||| |||||||||| |    
T  32835121 ctctctacaattaatatttaagggtattattgacaaaacaatacttaatgttgcattgaaacttgaaaatgacaagtactatgaaacgaaattattctct 32835022  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    | ||||| |||||||||||||||||||||||||    
T  32835021 acaatggacaagtattatgaaacggagggagta 32834989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 31873994 - 31873889
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||| ||||||||||  ||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |    
T  31873994 ctctctgcaataaatatataagggtatt-ttgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaataaaattattctct 31873896  T
Q  145 aaaatgg 151  Q
    |||||||    
T  31873895 aaaatgg 31873889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 48436369 - 48436466
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    ||||||||||||||||   ||| ||||||||||||||  |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  48436369 ctctctacaataaataattaagtgtattattgacaagctaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattattct 48436466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 26783661 - 26783747
Alignment:
Q  92 atgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatgggcaagtattatgaaacggagggagtat 178  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| | |||||||| | ||||||||| |||||    
T  26783661 atgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattctttaaaatagacaagtattgtaaaacggaggaagtat 26783747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 27707116 - 27706999
Alignment:
Q  49 ctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaa 148  Q
    |||||||||||||| | | |||||||||||||||||||| |||||||| |||| |||||||||||||| || |||||||||| ||||||||| || | ||    
T  27707116 ctacaataaatatgtagg-gtattattgacaagacaatagttaatgttacattaaaatttgaaagtgataaatattgtgaaataaaattatttttcagaa 27707018  T
Q  149 tgggcaagtattatgaaac 167  Q
    |||  || |||||||||||    
T  27707017 tggataaatattatgaaac 27706999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 48963264 - 48963390
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||| ||||||||||||  |||  ||||||||||||||||||||||||||||||||||||| || ||| ||| || |||| ||||| ||||||||||| |    
T  48963264 ctctttacaataaatatataaggatattattgacaagacaataattaatgttgcattgaaacttaaaaatgataaatattatgaaataaaattattctct 48963363  T
Q  145 aaaatgggcaagtattatgaaacggag 171  Q
    ||||| |  ||||| |||||| |||||    
T  48963364 aaaatagataagtaatatgaatcggag 48963390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 52009182 - 52009105
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagta 122  Q
    |||||||||||||||| | ||   |||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  52009182 ctctctacaataaataggtaatgttattattgacaagacaataattaatgttgcatcgaaacttgaaagtgacaagta 52009105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 6901730 - 6901831
Alignment:
Q  69 tattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatgggcaagtattatgaaacg 168  Q
    ||||||||| ||  |||| |||||||||||||||||| || |||||||||||||  ||||||||||||||||||  ||||||| ||| |||| |||||||    
T  6901730 tattattgataaatcaatgattaatgttgcattgaaacttaaaagtgacaagtaaagtgaaacaaaattattctccaaaatggacaa-tattgtgaaacg 6901828  T
Q  169 gag 171  Q
    |||    
T  6901829 gag 6901831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 54086697 - 54086818
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||||| |||| ||| | ||| |||||||||| ||  ||||||||||||||| ||||||| ||||||||||||| ||   |||||||||| ||||||      
T  54086697 ctctctataatacataggtaagggtattattgataaatcaataattaatgttgtattgaaacttgaaagtgacaaataaaatgaaacaaaagtattctcc 54086796  T
Q  145 aaaatgggcaagtattatgaaa 166  Q
    ||||||| |||||||| |||||    
T  54086797 aaaatggacaagtattgtgaaa 54086818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 1455257 - 1455186
Alignment:
Q  71 ttattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    ||||||||||  ||||||||||||||||||||||||| ||||||||||||||  || ||||||| |||||||    
T  1455257 ttattgacaaaccaataattaatgttgcattgaaattggaaagtgacaagtaaagtaaaacaaatttattct 1455186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 53559742 - 53559648
Alignment:
Q  46 tctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattatt 140  Q
    ||||||||||||||| | || ||||||||| | ||  |||| |||||||||||||||||| |||| |||||||||||   |||||||||||||||    
T  53559742 tctctacaataaataagtaacagtattattaataaatcaatgattaatgttgcattgaaacttgagagtgacaagtaaattgaaacaaaattatt 53559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 37781082 - 37781152
Alignment:
Q  46 tctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtga 116  Q
    ||||||||||||||||  ||| |||||||||||||  ||||||||||  ||| ||||||||||||||||||    
T  37781082 tctctacaataaatatttaagggtattattgacaaaccaataattaactttggattgaaatttgaaagtga 37781152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 40228336 - 40228280
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcatt 101  Q
    |||||||||||||||| | |||||| ||||| ||||| |||||||||||||||||||    
T  40228336 ctctctacaataaataagtaagagttttattaacaagccaataattaatgttgcatt 40228280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 46188911 - 46188967
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcatt 101  Q
    |||||||||||||||| |||||| ||||||||||||  |||||||||||||| ||||    
T  46188911 ctctctacaataaataagcaagaatattattgacaaaccaataattaatgttacatt 46188967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 24064368 - 24064462
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    |||||||||||||||| | ||   ||||||||| ||  |||||||||||||| |||| ||| |||||||||||| |||  |||||| |||||||||||    
T  24064368 ctctctacaataaataggtaa---tattattgataaaccaataattaatgttacattaaaacttgaaagtgacatgtaaagtgaaataaaattattct 24064462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 2154192 - 2154246
Alignment:
Q  64 aagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    ||||||| |||||| ||||||| | |||||||||||||||| |||||||||||||    
T  2154192 aagagtaatattgataagacaacatttaatgttgcattgaactttgaaagtgaca 2154246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 51584442 - 51584490
Alignment:
Q  72 tattgacaagacaataattaatgttgcattgaaatttgaaagtgacaag 120  Q
    ||||||||| ||||||||||||||| ||||||||||||||  |||||||    
T  51584442 tattgacaaaacaataattaatgttacattgaaatttgaatatgacaag 51584490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 44522612 - 44522679
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaa 112  Q
    |||||||||||||||||| || | ||||||| ||||  ||||| ||||||||| ||| ||||||||||    
T  44522612 ctctctacaataaatatgtaaaaatattattaacaaaccaatatttaatgttgtattaaaatttgaaa 44522679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 198948 - 198982
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  198948 tgtgttttctataatacccttaatcatttattatt 198982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13364936 - 13364970
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  13364936 tgtgttttctataatacccttaatcatttattatt 13364970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19241852 - 19241818
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  19241852 tgtgttttctataatacccttaatcatttattatt 19241818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 23088115 - 23088081
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  23088115 tgtgttttctataatacccttaatcatttattatt 23088081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36881373 - 36881407
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  36881373 tgtgttttctataatacccttaattatttattatt 36881407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46694294 - 46694260
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  46694294 tgtgttttctataatacccttaatcatttattatt 46694260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 23771399 - 23771326
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    ||||||||||||||||  |||| ||| ||  |  || |||||| |||||||||||||||| |||||||||||||    
T  23771399 ctctctacaataaataatcaagggtaataaaggtaaaacaatatttaatgttgcattgaactttgaaagtgaca 23771326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 32980752 - 32980679
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    ||||||||||||||||   ||| ||| |||||| || ||| || ||||||||| |||||| |||||||||||||    
T  32980752 ctctctacaataaataactaagggtaatattgataaaacattatttaatgttgtattgaattttgaaagtgaca 32980679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 37293595 - 37293644
Alignment:
Q  87 aattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaat 136  Q
    ||||||||||||||||||| ||||||| ||||||||   |||||||||||    
T  37293595 aattaatgttgcattgaaacttgaaagggacaagtaaaatgaaacaaaat 37293644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 43159894 - 43159967
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    |||||| ||||||||||  ||| ||| |||||| ||  ||| | |||||||||||||||| |||||||||||||    
T  43159894 ctctctgcaataaatatttaagggtaatattgataaatcaacatttaatgttgcattgaattttgaaagtgaca 43159967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 52805155 - 52805082
Alignment:
Q  49 ctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagta 122  Q
    ||||||| |||| | ||| || ||||||| ||  ||||||| |||||||||| |||| ||||||||||||||||    
T  52805155 ctacaattaataagtaagggtgttattgataaatcaataataaatgttgcatcgaaacttgaaagtgacaagta 52805082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 43775561 - 43775597
Alignment:
Q  82 acaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    |||||| |||||||||||||||| |||||||||||||    
T  43775561 acaatatttaatgttgcattgaactttgaaagtgaca 43775597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 51219255 - 51219291
Alignment:
Q  82 acaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    |||||| |||||||||||||||| |||||||||||||    
T  51219255 acaatatttaatgttgcattgaactttgaaagtgaca 51219291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 2540062 - 2539929
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2540062 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattcttt 2539963  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| |||||||||||||||||| |||||||    
T  2539962 aaaatggacaagtattatgaaacggaaggagtat 2539929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 11174355 - 11174222
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11174355 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattcttt 11174256  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||  ||||||||||||||||||||||||||    
T  11174255 aaaatgaacaagtattatgaaacggagggagtat 11174222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 7147058 - 7147190
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  7147058 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 7147157  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  7147158 aaaatggacaagtattatgaaacggagggagta 7147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 40058435 - 40058303
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  40058435 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 40058336  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  40058335 aaaatggacaagtattatgaaacggagggagta 40058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 40918863 - 40918731
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  40918863 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 40918764  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  40918763 aaaatggacaagtattatgaaacggagggagta 40918731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 30999656 - 30999523
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |    
T  30999656 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtaacaagtattgtgaaacaaaattattctct 30999557  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  30999556 aaaatggacaagtattatgaaacggagggagtat 30999523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 43275531 - 43275398
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  43275531 ctctctacaataaatatgcaagggtattattgacaagataataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 43275432  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  43275431 aaaatggacaagtattatgaaacggagggagtat 43275398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 11646457 - 11646324
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |    
T  11646457 ctctctacaataaatatgcaagggtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattctct 11646358  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  11646357 aaaatggacaagtattatgaaacggagggagtat 11646324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 36068225 - 36068358
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |    
T  36068225 ctctctacaataaatatgcaagggtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattctct 36068324  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  36068325 aaaatggacaagtattatgaaacggagggagtat 36068358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 37345716 - 37345848
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |    
T  37345716 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaaatgacaagtattgtgaaacaaaattattctct 37345815  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||| ||||||    
T  37345816 aaaatggacaagtattatgaaacggaaggagta 37345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 3585596 - 3585729
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |    
T  3585596 ctctctacaataaatatgcaagggtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattctct 3585695  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||| | |||||||||||||||||| |||||||    
T  3585696 aaaatagacaagtattatgaaacggatggagtat 3585729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 27035140 - 27035273
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||      
T  27035140 ctctctacagtaaatatgtaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctcc 27035239  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||  |||||||||||||||||||| |||||    
T  27035240 aaaatgaacaagtattatgaaacggaggcagtat 27035273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 20546424 - 20546308
Alignment:
Q  46 tctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttta 145  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |    
T  20546424 tctctacaataaatatgtaagggtattattgacaagacaataattaatgttgcattgaaacctgaaagtgacaagtattgtgaaacaaaattattcttca 20546325  T
Q  146 aaatgggcaagtattat 162  Q
    |||||| ||||||||||    
T  20546324 aaatggacaagtattat 20546308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 35866758 - 35866891
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||| ||||| |||||||||||||| ||  ||||||||||||||| ||||||| ||||||||||||||||   |||||||||||||||||      
T  35866758 ctctctacaatagatatgtaagagtattattgataaaccaataattaatgttgaattgaaacttgaaagtgacaagtaaaatgaaacaaaattattctcc 35866857  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||| | |||||||| ||||||||| |||||||    
T  35866858 aaaatagacaagtattgtgaaacggatggagtat 35866891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 27563999 - 27563902
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    |||||||||||||||| | ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||    
T  27563999 ctctctacaataaataggtaagggtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtaatatgaaacaaaattgttct 27563902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 28562574 - 28562699
Alignment:
Q  53 aataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatggg 152  Q
    |||||||| | ||||||| |||||| ||  ||||||||||||||||||||||| ||||||||||||||||   ||||||||||| |||||| |||||||     
T  28562574 aataaataggtaagagtaatattgataaaccaataattaatgttgcattgaaacttgaaagtgacaagtaaaatgaaacaaaataattcttcaaaatgga 28562673  T
Q  153 caagtattatgaaacggagggagtat 178  Q
     ||||||| ||| |||||||||||||    
T  28562674 taagtattgtgagacggagggagtat 28562699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 45400902 - 45400770
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | |||| ||||||||| ||   ||||||||||||||||||||||||| |||||||||| ||  ||||||||||||||||||      
T  45400902 ctctctacaataaataagtaagaatattattgataaattaataattaatgttgcattgaaatttaaaagtgacaaataaagtgaaacaaaattattctcc 45400803  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||  | |  ||||||||||||||||||||||    
T  45400802 aaaaacgacttgtattatgaaacggagggagta 45400770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 28568063 - 28568195
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||| |||||||||| | ||| ||| |||||| ||  ||||||||||||||||||||||| || |||||||||||||   ||||||||||| |||||      
T  28568063 ctctcaacaataaataggtaagggtaatattgataaaccaataattaatgttgcattgaaacttcaaagtgacaagtaaaatgaaacaaaataattctcc 28568162  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||| ||||| ||||||||||    
T  28568163 aaaatggacaagtattgtgaaatggagggagta 28568195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 28575656 - 28575788
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||| |||||||||| | ||| ||| |||||| ||  ||||||||||||||||||||||| || |||||||||||||   ||||||||||| |||||      
T  28575656 ctctcaacaataaataggtaagggtaatattgataaaccaataattaatgttgcattgaaacttcaaagtgacaagtaaaatgaaacaaaataattctcc 28575755  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||| ||||| ||||||||||    
T  28575756 aaaatggacaagtattgtgaaatggagggagta 28575788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 26628948 - 26628851
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    |||||||||||||||| | ||| |||||||||| ||  ||||||||||||||||||||||| |||||| |||||| ||  ||||||||||||||||||    
T  26628948 ctctctacaataaataggtaagggtattattgataaatcaataattaatgttgcattgaaacttgaaaatgacaaataaagtgaaacaaaattattct 26628851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 13881087 - 13880991
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattc 141  Q
    |||||||||||||||  | |||| ||||||| ||||  ||||||||||| ||||||||||| |||||||||||||||| | ||||||||||||||||    
T  13881087 ctctctacaataaattagtaagattattattaacaaatcaataattaatattgcattgaaacttgaaagtgacaagtaatttgaaacaaaattattc 13880991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 10180977 - 10180903
Alignment:
Q  68 gtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    |||||||||||||    |||| |||||||||||||||| |||||||||||||||| |||||||||||||| ||||    
T  10180977 gtattattgacaaattcataactaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattgttct 10180903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 30906797 - 30906718
Alignment:
Q  69 tattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaa 148  Q
    ||||||| ||||  ||||||||||| ||||||| |||||| ||||| ||||||| ||| ||| |||||||||||| ||||    
T  30906797 tattattaacaattcaataattaatattgcattaaaatttaaaagtaacaagtaatgtaaaataaaattattcttcaaaa 30906718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 28326790 - 28326734
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcatt 101  Q
    ||||| |||||||| |||||||| ||||||||||||  ||||||||| |||||||||    
T  28326790 ctctccacaataaacatgcaagattattattgacaaaccaataattagtgttgcatt 28326734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 39151547 - 39151607
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaa 105  Q
    |||| ||||||||||| | |||||||| |||||||||  ||||||||||||||| ||||||    
T  39151547 ctctttacaataaataggtaagagtatcattgacaagctaataattaatgttgccttgaaa 39151607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 37510420 - 37510519
Alignment:
Q  50 tacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaat 149  Q
    |||||||||||   |||| ||| ||||||||   || ||||||| || |||||||| || ||||||| |||||   ||||||||||||||||||||||||    
T  37510420 tacaataaatagataagaatataattgacaaattaagaattaattttacattgaaacttaaaagtgataagtaaaatgaaacaaaattattctttaaaat 37510519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2540115 - 2540081
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  2540115 tgtgttttctataatacccttaatcatttattatt 2540081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3585544 - 3585578
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  3585544 tgtgttttctataatacccttaatcatttattatt 3585578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11174407 - 11174373
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11174407 tgtgttttctataatacccttaatcatttattatt 11174373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11646509 - 11646475
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11646509 tgtgttttctataatacccttaatcatttattatt 11646475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30999707 - 30999673
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  30999707 tgtgttttctataatacccttaatcatttattatt 30999673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37345664 - 37345698
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  37345664 tgtgttttctataatacccttaatcatttattatt 37345698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40058487 - 40058453
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  40058487 tgtgttttctataatacccttaatcatttattatt 40058453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40918915 - 40918881
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  40918915 tgtgttttctataatacccttaatcatttattatt 40918881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43275583 - 43275549
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  43275583 tgtgttttctataatacccttaatcatttattatt 43275549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 3720792 - 3720719
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    |||||| ||||||||||   |||||| |||||  || |||| | |||||||||||||||| |||||||||||||    
T  3720792 ctctctgcaataaatatcttagagtaatattggtaaaacaacatttaatgttgcattgaactttgaaagtgaca 3720719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 32010256 - 32010285
Alignment:
Q  89 ttaatgttgcattgaaatttgaaagtgaca 118  Q
    ||||||||||||||||||||||||||||||    
T  32010256 ttaatgttgcattgaaatttgaaagtgaca 32010285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 33751289 - 33751245
Alignment:
Q  68 gtattattgacaagacaataattaatgttgcattgaaatttgaaa 112  Q
    |||||||||| || |||||||||||| |||||||||| |||||||    
T  33751289 gtattattgataaaacaataattaatattgcattgaactttgaaa 33751245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 34046926 - 34046890
Alignment:
Q  82 acaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    |||||| |||||||||||||||| |||||||||||||    
T  34046926 acaatatttaatgttgcattgaactttgaaagtgaca 34046890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 1605723 - 1605856
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  1605723 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgtattgaaatttgaaagtgacaagtattgtgaaacaaaattattctct 1605822  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  1605823 aaaatggacaagtattatgaaacggagggagtat 1605856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 45 - 179
Target Start/End: Original strand, 13757352 - 13757486
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  13757352 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 13757451  T
Q  145 aaaatgggcaagtattatgaaacggagggagtatc 179  Q
    ||||||| |||||||||||||||||| ||||||||    
T  13757452 aaaatggacaagtattatgaaacggatggagtatc 13757486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 8626627 - 8626760
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |    
T  8626627 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctct 8626726  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  8626727 aaaatggacaagtattatgaaacggagggagtat 8626760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 15064827 - 15064694
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||      
T  15064827 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgtattgaaacttgaaagtgacaagtattatgaaacaaaattattctcc 15064728  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  15064727 aaaatggacaagtattatgaaacggagggagtat 15064694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 4129572 - 4129703
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | |    
T  4129572 ctctctacaataaatatgcaagggtattattgacaagacaata-ttaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattttct 4129670  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  4129671 aaaatggacaagtattatgaaacggagggagta 4129703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 7761445 - 7761577
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| ||||||||||||| | |||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |    
T  7761445 ctctctacaataaatatgcaagggtattattgacaaaataataattaatattgcattgaaacttgaaagtgacaaatattgtgaaacaaaattattctct 7761544  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  7761545 aaaatggacaagtattatgaaacggagggagta 7761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 29260337 - 29260469
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| |    
T  29260337 ctctctacaataaatatgtaagggtattattgacaagacagtaattaatgttgcattgaaacttgaaaatgacaagtattttgaaacaaaattattctct 29260436  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  29260437 aaaatggacaagtattatgaaacggagggagta 29260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 17942588 - 17942721
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||      
T  17942588 ctctctacaataaatatgtaagggtattattgacaaaacaataattaatgttgcattgaaacttgaaagtgacaagtattataaaacaaaattattctcc 17942687  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  17942688 aaaatggacaagtattatgaaacggagggagtat 17942721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 31559870 - 31559738
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| ||||||||||| |    
T  31559870 ctctctacaataaatatgcaagggtattattaacaagacaataattaatgttgcattgaaacttgaaagtaacaagtattgtaaaataaaattattctct 31559771  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    |||||||  ||||||||||||||||||||||||    
T  31559770 aaaatggagaagtattatgaaacggagggagta 31559738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 8235770 - 8235895
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  8235770 ctctctacaataaatatgtaagggtattattgataagacaataattaatattgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 8235869  T
Q  145 aaaatgggcaagtattatgaaacgga 170  Q
    ||||| | ||||||||||||||||||    
T  8235870 aaaatagacaagtattatgaaacgga 8235895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 30734615 - 30734483
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| |      
T  30734615 ctctctacaataaatatgcaagggtattattgataagataataattaatgttgcattgaaatttgaaaatgacaactattgtaaaacaaaattattttcc 30734516  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||| ||||| ||||    
T  30734515 aaaatggacaagtattatgaaaaggaggaagta 30734483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 847900 - 847831
Alignment:
Q  53 aataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagta 122  Q
    |||||||||  |||||||||||||||||  |||||||||||||||||||||| ||||||| |||||||||    
T  847900 aataaatatttaagagtattattgacaaagcaataattaatgttgcattgaactttgaaaatgacaagta 847831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 20398362 - 20398237
Alignment:
Q  53 aataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatggg 152  Q
    |||||||| | ||| |||||||||||||   |||||||||||||||||| ||| ||||||||| ||||||  |||||||||||||||| |  ||||  |     
T  20398362 aataaataggtaagggtattattgacaatttaataattaatgttgcattaaaacttgaaagtggcaagtaaagtgaaacaaaattattttccaaaagtga 20398263  T
Q  153 caagtattatgaaacggagggagtat 178  Q
    || ||||| ||||||| |||||||||    
T  20398262 catgtattgtgaaacgaagggagtat 20398237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 1814762 - 1814871
Alignment:
Q  69 tattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatgggcaagtattatgaaacg 168  Q
    ||||||||||||  ||||||| |||||||||||| || || |||||||||||||  |||||| |||||||||||| ||||  | || ||||| |||||||    
T  1814762 tattattgacaaaccaataatcaatgttgcattggaaattaaaagtgacaagtaaagtgaaataaaattattcttcaaaagtgacatgtattgtgaaacg 1814861  T
Q  169 gagggagtat 178  Q
     ||| |||||    
T  1814862 aaggaagtat 1814871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 3798247 - 3798376
Alignment:
Q  48 tctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaa 147  Q
    |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||| ||||||||||||||||  ||||||||||| |||| ||||||    
T  3798247 tctataataaataggtaagggtattattgataaactcataattaatgttgcattaaaacttgaaagtgacaagtaaagtgaaacaaaactattatttaaa 3798346  T
Q  148 atgggcaagtattatgaaacggagggagta 177  Q
    |  | ||  ||||||||| | |||||||||    
T  3798347 aacgacatatattatgaagcagagggagta 3798376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 31244878 - 31244951
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    ||||| |||||||||||  |||| || |||||| || |||| |||||||||||||||||| |||||||||||||    
T  31244878 ctctccacaataaatatctaagaataatattgataaaacaagaattaatgttgcattgaactttgaaagtgaca 31244951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 879356 - 879309
Alignment:
Q  65 agagtattattgacaagacaataattaatgttgcattgaaatttgaaa 112  Q
    ||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  879356 agagttttattgacaaaacaataattaatgttgcattgaactttgaaa 879309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 26860932 - 26861006
Alignment:
Q  68 gtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    |||||||||||||  ||||||| ||||||| |||||||  ||||| |||||||||  |||||||||| |||||||    
T  26860932 gtattattgacaaatcaataatcaatgttgtattgaaacatgaaaatgacaagtaaagtgaaacaaacttattct 26861006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 29238537 - 29238604
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaa 112  Q
    |||||| |||||||||   ||||| ||| ||||||| ||||||||||||||| ||||||| |||||||    
T  29238537 ctctctgcaataaatagttaagagaattcttgacaaaacaataattaatgttacattgaactttgaaa 29238604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1605672 - 1605706
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  1605672 tgtgttttctataatacccttaatcatttattatt 1605706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7761392 - 7761426
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  7761392 tgtgttttctataatacccttaatcatttattatt 7761426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8235717 - 8235751
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  8235717 tgtgttttctataatacccttaatcatttattatt 8235751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8626575 - 8626609
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  8626575 tgtgttttctataatacccttaatcatttattatt 8626609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29260285 - 29260319
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  29260285 tgtgttttctataatacccttaatcatttattatt 29260319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30734667 - 30734633
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  30734667 tgtgttttctataatacccttaatcatttattatt 30734633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 21310566 - 21310699
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  21310566 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 21310665  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  21310666 aaaatggacaagtattatgaaacggagggagtat 21310699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 24706379 - 24706240
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |    
T  24706379 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctct 24706280  T
Q  145 aaaatgggcaagtattatgaaacggagggagtatctttta 184  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  24706279 aaaatggacaagtattatgaaacggagggagtatcattta 24706240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 14261189 - 14261322
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |    
T  14261189 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctct 14261288  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  14261289 aaaatggacaagtattatgaaacggagggagtat 14261322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 22321400 - 22321267
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  22321400 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 22321301  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||| | ||||||||||||||||||||||||||    
T  22321300 aaaatagacaagtattatgaaacggagggagtat 22321267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 25704796 - 25704929
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |    
T  25704796 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcactgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 25704895  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  25704896 aaaatggacaagtattatgaaacggagggagtat 25704929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 12071705 - 12071837
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  12071705 ctctctacaataaatatgcaagggtattattgacaagacaagaattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 12071804  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  12071805 aaaatggacaagtattatgaaacggagggagta 12071837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 40122619 - 40122487
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  40122619 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 40122520  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| ||||||||||||||||||| |||||    
T  40122519 aaaatggacaagtattatgaaacggagagagta 40122487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 44568982 - 44569115
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||| |    
T  44568982 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacatgaaagggacaagtattgtgaaacaaaattattctct 44569081  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  44569082 aaaatggacaagtattatgaaacggagggagtat 44569115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 21064906 - 21065037
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |    
T  21064906 ctctctacaataaatatgtaagagtattattgtcaagacaataattaatgttgcattgaaatttgaaagcgataagtattgtgaaacaaaattattctct 21065005  T
Q  145 aaaatgggcaagtattatgaaacggagggagt 176  Q
    ||||||  ||||||||||||||||||||||||    
T  21065006 aaaatgaacaagtattatgaaacggagggagt 21065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 21661667 - 21661537
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| || |||||||||||||||||||||| |    
T  21661667 ctctctacaataaatatgcaagggtattattgacaagacaatacttaatgttgcattgaaacttgaaagtgataaatattgtgaaacaaaattattctct 21661568  T
Q  145 aaaatgggcaagtattatgaaacggagggag 175  Q
    ||||||| |||||||||||||||||||||||    
T  21661567 aaaatggacaagtattatgaaacggagggag 21661537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 21670431 - 21670301
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| || |||||||||||||||||||||| |    
T  21670431 ctctctacaataaatatgcaagggtattattgacaagacaatacttaatgttgcattgaaacttgaaagtgataaatattgtgaaacaaaattattctct 21670332  T
Q  145 aaaatgggcaagtattatgaaacggagggag 175  Q
    ||||||| |||||||||||||||||||||||    
T  21670331 aaaatggacaagtattatgaaacggagggag 21670301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 50768007 - 50768129
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |    
T  50768007 ctctctacaataaatatgtaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaaatattgtgaaacaaaattattctct 50768106  T
Q  145 aaaatgggcaagtattatgaaac 167  Q
    ||||||| |||||||||||||||    
T  50768107 aaaatggacaagtattatgaaac 50768129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 20249146 - 20249013
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||      
T  20249146 ctctctacaataaatatgtaagggtattattgacaagacaataattaatattgcattgaaacttgaaagagacaggtattgtgaaacaaaattattctcc 20249047  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||| ||||||    
T  20249046 aaaatggacaagtattatgaaacggagtgagtat 20249013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 19692867 - 19692999
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | ||| || ||||||| ||  ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||| |    
T  19692867 ctctctacaataaataagtaagggtgttattgataaaccaataattaatgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattctct 19692966  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||| | |||||||| ||| ||||| ||||||    
T  19692967 aaaatagacaagtattgtgatacggatggagta 19692999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 19703452 - 19703584
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | ||| || ||||||| ||  ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||| |    
T  19703452 ctctctacaataaataagtaagggtgttattgataaaccaataattaatgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattctct 19703551  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||| | |||||||| ||| ||||| ||||||    
T  19703552 aaaatagacaagtattgtgatacggatggagta 19703584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 18507398 - 18507276
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||||| |||||||| | |||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| || |    
T  18507398 ctctctataataaataagtaagaatattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagaaatgtgaaacaaaattatgctct 18507299  T
Q  145 aaaatgggcaagtattatgaaac 167  Q
    ||||  | |||||||| ||||||    
T  18507298 aaaagcgacaagtattgtgaaac 18507276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 31892384 - 31892474
Alignment:
Q  52 caataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    |||||||||||||||  |||||||||||||||||||||||||||| |||| ||| || ||||||||||||||||| |||||||||||||||    
T  31892384 caataaatatgcaaggctattattgacaagacaataattaatgttacattaaaacttaaaagtgacaagtattgtaaaacaaaattattct 31892474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 6129081 - 6128956
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||||||||||||||   ||| |||||||||| ||  ||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||     
T  6129081 ctctctacaataaatagataagggtattattgataaaccaataattaatgttgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattattcttc 6128982  T
Q  145 aaaatgggcaagtattatgaaacgga 170  Q
    ||||  | || ||||| |||||||||    
T  6128981 aaaagcgacatgtattgtgaaacgga 6128956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 50839125 - 50839031
Alignment:
Q  83 caataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||  ||||  | |||||||| ||||| ||||||||||    
T  50839125 caataattaatgttgcattgaaacttgaaaatgacaagtaatgtgaaacaaaattattctccaaaagcgacaagtattgtgaaatggagggagta 50839031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 34324715 - 34324655
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaa 105  Q
    |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  34324715 ctctctacaataaatatgcaagggtattattgacaagaaaatcattaatgttgcattgaaa 34324655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 32543627 - 32543762
Alignment:
Q  48 tctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaa 147  Q
    |||||||||||||   ||| |||||| ||||||  ||||||||||||| ||||| ||| |||||||| |||||||   ||||||||||||||||| ||||    
T  32543627 tctacaataaatagataagggtattaatgacaaaccaataattaatgtcgcattaaaacttgaaagtaacaagtaaaatgaaacaaaattattctctaaa 32543726  T
Q  148 atgggcaagtattatgaaacggagggagtatctttt 183  Q
    |  | |||||||| |||||| || ||||||| ||||    
T  32543727 agcgacaagtattgtgaaacagaaggagtatatttt 32543762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14261137 - 14261171
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14261137 tgtgttttctataatacccttaataatttattatt 14261171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 50767957 - 50767991
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  50767957 tgtgttttctataatacccttaataatttattatt 50767991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 48652370 - 48652466
Alignment:
Q  46 tctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    |||||||  |||||| | ||| |||||||| | ||  ||||||||||||| ||||| ||| || ||||| |||||||  ||||||||||||||||||    
T  48652370 tctctacgttaaataggtaagggtattattaataaatcaataattaatgtcgcattaaaactttaaagtaacaagtaaagtgaaacaaaattattct 48652466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 1146178 - 1146249
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtga 116  Q
    ||||||||||||||||  |||| ||| ||  | ||| |||| | ||||||||||||||||||||||||||||    
T  1146178 ctctctacaataaataatcaagggtaataaaggcaaaacaacatttaatgttgcattgaaatttgaaagtga 1146249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12071654 - 12071688
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  12071654 tgtgttttctataatacccttaatcatttattatt 12071688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 17038409 - 17038355
Alignment:
Q  68 gtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagta 122  Q
    |||||||||| ||||||||||||||||||||||  || ||| ||| |||||||||    
T  17038409 gtattattgataagacaataattaatgttgcatgaaactttcaaaatgacaagta 17038355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21310518 - 21310552
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  21310518 tgtgttttctataatacccttaatcatttattatt 21310552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22321451 - 22321417
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  22321451 tgtgttttctataatacccttaatcatttattatt 22321417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24706431 - 24706397
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  24706431 tgtgttttctataatacccttaatcatttattatt 24706397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25704744 - 25704778
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  25704744 tgtgttttctataatacccttaatcatttattatt 25704778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 30939263 - 30939197
Alignment:
Q  52 caataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    |||||||||| |||| ||| |||||  || |||| | |||||||||||||||| |||||||||||||    
T  30939263 caataaatatccaagggtaatattggtaaaacaacatttaatgttgcattgaactttgaaagtgaca 30939197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34324766 - 34324732
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  34324766 tgtgttttctataatacccttaatcatttattatt 34324732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 38617931 - 38617857
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaa 119  Q
    |||||| ||||||||||  |||  || |||||| || |||||| ||||||||||||| || ||||||||||||||    
T  38617931 ctctctgcaataaatatataaggataatattgataaaacaatatttaatgttgcattaaactttgaaagtgacaa 38617857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44568930 - 44568964
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  44568930 tgtgttttctataatacccttaatcatttattatt 44568964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 26676641 - 26676564
Alignment:
Q  107 ttgaaagtgacaagtattgtgaaacaaaattattctt-taaaatgggcaagtattatgaaacggagggagtatctttt 183  Q
    ||||||||||||||||  || ||||||||||||||||  ||||  |||||||||| |||||||||  |||||| ||||    
T  26676641 ttgaaagtgacaagtaaagtaaaacaaaattattcttaaaaaaatggcaagtattgtgaaacggaatgagtatttttt 26676564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 53219177 - 53219218
Alignment:
Q  71 ttattgacaagacaataattaatgttgcattgaaatttgaaa 112  Q
    ||||||||||  |||||||||||||||||||||| |||||||    
T  53219177 ttattgacaaatcaataattaatgttgcattgaactttgaaa 53219218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 8735467 - 8735399
Alignment:
Q  82 acaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatg 150  Q
    |||||| ||||| |||||||||| |||||||||||||| ||    ||||||||||| |||| |||||||    
T  8735467 acaatatttaatattgcattgaactttgaaagtgacaattaaatagaaacaaaatttttctctaaaatg 8735399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 20714413 - 20714349
Alignment:
Q  84 aataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaa 148  Q
    ||||||||||||||||||||||||| ||| ||| || || | ||||| ||| ||||||| |||||    
T  20714413 aataattaatgttgcattgaaatttaaaaatgataaataatatgaaataaatttattctctaaaa 20714349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 53599952 - 53599988
Alignment:
Q  82 acaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    |||||| |||||||||||||||| |||||||||||||    
T  53599952 acaatatttaatgttgcattgaactttgaaagtgaca 53599988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 56576269 - 56576305
Alignment:
Q  82 acaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    |||||| |||||||||||||||| |||||||||||||    
T  56576269 acaatatttaatgttgcattgaactttgaaagtgaca 56576305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 22388270 - 22388137
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  22388270 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 22388171  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  22388170 aaaatggacaagtattatgaaacggagggagtat 22388137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 23366934 - 23367067
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |    
T  23366934 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgtattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 23367033  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  23367034 aaaatggacaagtattatgaaacggagggagtat 23367067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 3519001 - 3519185
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt-------annnnnnnnctctctacaataaatatgcaagagtattattgacaagacaataattaat 93  Q
    |||||||||||||||||||||||||||||||||||       |        |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3519001 tgtgttttctataatacccttaataatttattatttcattttattttttctctctctacaataaatatgcaagggtattattgacaagacaataattaat 3519100  T
Q  94 gttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  3519101 gttacattgaaacttgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggaggaagtat 3519185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 37673921 - 37673743
Alignment:
Q  1 tgtgttttctataatacccttaataatttattattannnnnnnn--ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgc 98  Q
    |||||||||||||||||||||||| |||||||||||          |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37673921 tgtgttttctataatacccttaatcatttattattattttttttttctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgc 37673822  T
Q  99 attgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| ||| |||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||| ||||||    
T  37673821 attgaaacttggaagtgacaagtattttgaaacaaagttattctctaaaatggacaagtattatgaaacggaaggagta 37673743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 1102646 - 1102779
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |    
T  1102646 ctctctacaataaatatgcaagggtgttattgacaagacaataattaatgttgcattgaaacttgaaagtgacgagtattgtgaaacaaaattattctct 1102745  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
     |||||| ||||||||||||||||||||||||||    
T  1102746 caaatggacaagtattatgaaacggagggagtat 1102779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 39938315 - 39938448
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| |    
T  39938315 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattaaaacttaaaagtgacaagtattgtgaaacaaaattattctct 39938414  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| |||||||||| |||||||||||||||    
T  39938415 aaaatggacaagtattataaaacggagggagtat 39938448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 1646432 - 1646564
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |    
T  1646432 ctctctacaataaatatgcaagggtattattgacaagataatacttaatgttgcattgaaacttgaaagtgataagtattgtgaaacaaaattattctct 1646531  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| || ||||||||||||||||||||||    
T  1646532 aaaatggacaggtattatgaaacggagggagta 1646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 12969872 - 12969740
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||  ||| |||||||||| ||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||      
T  12969872 ctctctacaataaatatttaagggtattattgagaagacaataattaatattgcattgaaacttgaaagagacatgtattgtgaaacaaaattattctcc 12969773  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  12969772 aaaatggacaagtattatgaaacggagggagta 12969740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 40757020 - 40756911
Alignment:
Q  68 gtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatgggcaagtattatgaaac 167  Q
    |||||||||| ||  ||||||||||||||||||||||| ||||||||||||| ||  ||||||||||||||||||  ||||||| |||||||||||||||    
T  40757020 gtattattgataaaccaataattaatgttgcattgaaacttgaaagtgacaactaaagtgaaacaaaattattctccaaaatggacaagtattatgaaac 40756921  T
Q  168 ggagggagta 177  Q
    ||||||||||    
T  40756920 ggagggagta 40756911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 39562022 - 39561895
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | ||| |||||||||||||  |||||||||||||||||||||||||| ||||||||||     ||||||||||||||||||      
T  39562022 ctctctacaataaataagtaagggtattattgacaaaccaataattaatgttgcattgaaatttaaaagtgacaa-----gtgaaacaaaattattctcc 39561928  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||  | || ||||| ||||||||||||||||    
T  39561927 aaaaacgacatgtattgtgaaacggagggagta 39561895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 37284649 - 37284525
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | |||||||||| ||| ||  ||||||| ||||||||||||||| |||||| |||||||||  ||||||||||||||||||      
T  37284649 ctctctacaataaataggtaagagtattagtgataaatcaataat-aatgttgcattgaaacttgaaaatgacaagtaaagtgaaacaaaattattctcc 37284551  T
Q  145 aaaatgggcaagtattatgaaacggag 171  Q
    |||| | | ||||||| ||||||||||    
T  37284550 aaaa-gagaaagtattgtgaaacggag 37284525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 28110220 - 28110139
Alignment:
Q  52 caataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaa 133  Q
    ||||||||||| ||| |||||||||| ||  ||||||||||||||||||||||| |||||| ||||||||| ||||||||||    
T  28110220 caataaatatgtaagggtattattgataaaccaataattaatgttgcattgaaacttgaaaatgacaagtaatgtgaaacaa 28110139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 36447426 - 36447532
Alignment:
Q  68 gtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatgggcaagtattatgaaac 167  Q
    |||||||||| ||  ||||||||||  ||||||||||||||||||||||| | ||  |||||||||||||||||| |||||  | || ||||| ||||||    
T  36447426 gtattattgataaaccaataattaacattgcattgaaatttgaaagtgacgaataaagtgaaacaaaattattctctaaaagcgacatgtattgtgaaac 36447525  T
Q  168 ggaggga 174  Q
    |||||||    
T  36447526 ggaggga 36447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 170
Target Start/End: Original strand, 4917908 - 4918031
Alignment:
Q  47 ctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaa 146  Q
    |||||| ||||||| | ||| | | |||||||||| ||||||||||||||| ||| ||||| |||||||||||||| |||||| ||||||| || || ||    
T  4917908 ctctaccataaataggtaagggaactattgacaagccaataattaatgttgaattaaaattcgaaagtgacaagtaatgtgaagcaaaattgtttttcaa 4918007  T
Q  147 aatgggcaagtattatgaaacgga 170  Q
    ||  | ||| |||| |||||||||    
T  4918008 aaatgacaaatattgtgaaacgga 4918031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 19976512 - 19976568
Alignment:
Q  84 aataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattatt 140  Q
    |||||||||||||||||||||| ||||||||||||||||   |||||||||||||||    
T  19976512 aataattaatgttgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattatt 19976568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 32839022 - 32838958
Alignment:
Q  84 aataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaa 148  Q
    |||||||||| ||||||||||| ||||||||||||||||   |||||||||||||||||| ||||    
T  32839022 aataattaatattgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattattcttcaaaa 32838958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 28401467 - 28401396
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtga 116  Q
    |||| |||||||| || ||||| |||||||||||||  ||||||||||||| || |||||| ||||||||||    
T  28401467 ctctttacaataattaggcaagggtattattgacaaatcaataattaatgtggccttgaaacttgaaagtga 28401396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 34242119 - 34242221
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | |||  ||||||||| ||  ||||| ||||| ||||||| ||| || |||||||| ||||   ||||||||||||||||| |    
T  34242119 ctctctacaataaataggtaaggatattattgataaaccaatatttaatattgcattaaaacttaaaagtgaccagtaaaatgaaacaaaattattctct 34242218  T
Q  145 aaa 147  Q
    |||    
T  34242219 aaa 34242221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 14779964 - 14780017
Alignment:
Q  89 ttaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    ||||| ||||||||||| ||||||||||||||||   |||||||||||||||||    
T  14779964 ttaatcttgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattattct 14780017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 1002825 - 1002786
Alignment:
Q  83 caataattaatgttgcattgaaatttgaaagtgacaagta 122  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  1002825 caataattaatgttgcattgagatttgaaaatgacaagta 1002786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1646380 - 1646414
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  1646380 tgtgttttctataatacccttaatcatttattatt 1646414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22388319 - 22388285
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  22388319 tgtgttttctataatacccttaatcatttattatt 22388285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23366882 - 23366916
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  23366882 tgtgttttctataatacccttaatcatttattatt 23366916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39938263 - 39938297
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  39938263 tgtgttttctataatacccttaatcatttattatt 39938297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 43077397 - 43077331
Alignment:
Q  52 caataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    ||||||||||  ||| ||| |||||  || |||||| |||||||||||||||| |||||||||||||    
T  43077397 caataaatatctaagggtaatattggtaaaacaatatttaatgttgcattgaactttgaaagtgaca 43077331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 32323742 - 32323698
Alignment:
Q  68 gtattattgacaagacaataattaatgttgcattgaaatttgaaa 112  Q
    ||||| ||||||| ||||||||| ||||||||||||| |||||||    
T  32323742 gtatttttgacaaaacaataattgatgttgcattgaactttgaaa 32323698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 40783789 - 40783656
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  40783789 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 40783690  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  40783689 aaaatggacaagtattatgaaacggagggagtat 40783656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 321771 - 321903
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |    
T  321771 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaaatattctct 321870  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  321871 aaaatggacaagtattatgaaacggagggagta 321903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 23045411 - 23045279
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |    
T  23045411 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctct 23045312  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  23045311 aaaatggacaagtattatgaaacggagggagta 23045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 23526385 - 23526517
Alignment:
Q  46 tctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttta 145  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  23526385 tctctacaataaatatgtaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattcttca 23526484  T
Q  146 aaatgggcaagtattatgaaacggagggagtat 178  Q
    |||||| ||||||||||||||||||||||||||    
T  23526485 aaatggacaagtattatgaaacggagggagtat 23526517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 47037984 - 47037852
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  47037984 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtaaaacaaaattattcttt 47037885  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||| | |||||||||||||||||||||||||    
T  47037884 aaaatagacaagtattatgaaacggagggagta 47037852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 284478 - 284611
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |    
T  284478 ctctctacaataaatatgcaagggtattattgataagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattctct 284577  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  284578 aaaatggacaagtattatgaaacggagggagtat 284611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 33082892 - 33083022
Alignment:
Q  48 tctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaa 147  Q
    ||||||||||||||  ||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  33082892 tctacaataaatatttaagggtattattgagaagacaataattaatattgcattgaaatttgaaagagacatgtattgtgaaacaaaattattctttaaa 33082991  T
Q  148 atgggcaagtattatgaaacggagggagtat 178  Q
    |||| ||||||||||||||||||||||||||    
T  33082992 atggacaagtattatgaaacggagggagtat 33083022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 46771783 - 46771910
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||     
T  46771783 ctctctacaataaatatgtaagagtattattgacaagaaaataattaatgttacattgaaacttgaaagtgataagtattgtgaaacaaaattattcttc 46771882  T
Q  145 aaaatgggcaagtattatgaaacggagg 172  Q
    ||||||  ||||||||||||||||||||    
T  46771883 aaaatgaacaagtattatgaaacggagg 46771910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 27211087 - 27210961
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||     
T  27211087 ctctctgcaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttaaatgtgacaagtattgtgaaacaaaattattctta 27210988  T
Q  145 aaaatgggcaagtattatgaaacggag 171  Q
    ||||||| ||| |||||||||||||||    
T  27210987 aaaatggacaaatattatgaaacggag 27210961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 40562416 - 40562293
Alignment:
Q  46 tctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttta 145  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |    
T  40562416 tctctgcaataaatatgcaag-gtatcattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtaaaacaaaatcattcttca 40562318  T
Q  146 aaatgggcaagtattatgaaacgga 170  Q
    |||||| |||||||||| |||||||    
T  40562317 aaatggacaagtattataaaacgga 40562293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 24772035 - 24771905
Alignment:
Q  48 tctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaa 147  Q
    ||||||||||||||  |||  ||||||||| || |||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||    
T  24772035 tctacaataaatatttaaggctattattgaaaaaacaataattaatattgcattgaaacttgaaagagacatgtattgtgaaacaaaattattctctaaa 24771936  T
Q  148 atgggcaagtattatgaaacggagggagtat 178  Q
    |||| ||||||||||||||||||||||||||    
T  24771935 atggacaagtattatgaaacggagggagtat 24771905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 40261417 - 40261314
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||| ||| |||||||||||||  ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||     
T  40261417 ctctctacaataaatatgtaagggtattattgacaaaccaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattattcttc 40261318  T
Q  145 aaaa 148  Q
    ||||    
T  40261317 aaaa 40261314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 51064886 - 51064753
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | ||| |||||||||| ||   ||||||||| |||||||||||| ||||||||||||| ||  |||||||||||||||||| |    
T  51064886 ctctctacaataaataggtaagggtattattgataaactaataattaacgttgcattgaaacttgaaagtgacaaataaagtgaaacaaaattattctct 51064787  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| |||||||| |||||| || |||||||    
T  51064786 aaaatggacaagtattgtgaaacagacggagtat 51064753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 31003919 - 31003787
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | ||| ||||||| |||||  ||| ||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||      
T  31003919 ctctctacaataaataggtaagggtattatggacaaaccaacaattaatgttgcattgaaacttgaaagtggcaagtaatgtgaaacaaaattattctcc 31003820  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||  |  ||||||| |||||| |||||||||    
T  31003819 aaaagcgataagtattgtgaaacagagggagta 31003787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 40052596 - 40052501
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattatt 140  Q
    ||||||| |||||||| ||||   ||||||||||||  ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  40052596 ctctctataataaataagcaacgatattattgacaaaccaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattatt 40052501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 18396839 - 18396971
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | ||| | |||||||| ||| ||||||||||||||||||||||| ||||||||||||| |  ||| |||||||||||||||      
T  18396839 ctctctacaataaataagtaagggaattattgaaaagtcaataattaatgttgcattgaaacttgaaagtgacaaattatgtaaaacaaaattattctcc 18396938  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||    |||||||| ||||| ||||||||||    
T  18396939 aaaagcaacaagtattgtgaaatggagggagta 18396971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 23166983 - 23166858
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||||| ||||||||   |||||||||||||||||  ||||||||||||||| ||||||| |||||||| | || || ||||||||||||||||||| |    
T  23166983 ctctctaaaataaatagataagagtattattgacaaatcaataattaatgttgtattgaaacttgaaagtaataaataatgtgaaacaaaattattctct 23166884  T
Q  145 aaaatgggcaagtattatgaaacgga 170  Q
    ||||  | | |||||| |||||||||    
T  23166883 aaaagcgacgagtattgtgaaacgga 23166858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 27143144 - 27143014
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||||||| |||||| | ||| |||||||||||||  ||||||||||||||| ||||||| |||  ||||||||||| |||||||||||||||||||      
T  27143144 ctctctacagtaaataggtaagggtattattgacaaaccaataattaatgttgtattgaaacttg--agtgacaagtaatgtgaaacaaaattattctcc 27143047  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||  | ||| ||||||||| |||| ||||||    
T  27143046 aaaagcgacaattattatgaagcggatggagta 27143014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 14925610 - 14925734
Alignment:
Q  46 tctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttta 145  Q
    ||||||||||||||| | |||||||||||||||||  |||||  ||| |||||||||||| ||||||  ||||||||  ||||||||||||||| || ||    
T  14925610 tctctacaataaataggtaagagtattattgacaaaccaata--taaggttgcattgaaacttgaaaacgacaagtaaagtgaaacaaaattatgctcta 14925707  T
Q  146 aaatgggcaagtattatgaaacggagg 172  Q
    |||  | |||||||| |||||||||||    
T  14925708 aaaacgacaagtattgtgaaacggagg 14925734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 24876714 - 24876803
Alignment:
Q  53 aataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    |||||||| | |||||||||||||||||  ||||||||||||| ||||||| | ||||||||||||||||   |||||||||||||||||    
T  24876714 aataaataagtaagagtattattgacaaaccaataattaatgtcgcattgacacttgaaagtgacaagtaaaatgaaacaaaattattct 24876803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 1749457 - 1749523
Alignment:
Q  83 caataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaat 149  Q
    |||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||    
T  1749457 caataactaatgttgcattgaaacttaaaagtaacaagtattgtgaaacaaaattattcattaaaat 1749523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 34458856 - 34458759
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    ||||||| ||| |||||| ||| ||||||| |  ||  |||||||||||||||||| |||| ||||||||||||||||  ||||||||||||||||||    
T  34458856 ctctctataatgaatatgtaagggtattatcggtaaaccaataattaatgttgcatcgaaacttgaaagtgacaagtaaagtgaaacaaaattattct 34458759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 31061590 - 31061463
Alignment:
Q  46 tctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca---agtattgtgaaacaaaattattct 142  Q
    |||||||| ||||||||  || ||||||||| |||  ||||||||||||||||||||||| |||| |||||||   |||| ||||||| ||||||||| |    
T  31061590 tctctacagtaaatatgtgagggtattattgtcaaaccaataattaatgttgcattgaaacttgagagtgacaagtagtaatgtgaaataaaattatttt 31061491  T
Q  143 ttaaaatgggcaagtattatgaaacgga 170  Q
      ||||  | |||||||| |||||||||    
T  31061490 ccaaaagtgacaagtattgtgaaacgga 31061463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 1837937 - 1837826
Alignment:
Q  68 gtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagta---ttgtgaaacaaaattattctttaaaatgggcaagtattatga 164  Q
    |||||||||| ||  ||||||||||||||||||||||| || |||||||||||||   |  |||||||||||||||||| ||||    || |||||||||    
T  1837937 gtattattgataaatcaataattaatgttgcattgaaacttaaaagtgacaagtaaattattgaaacaaaattattcttcaaaa--aacatgtattatga 1837840  T
Q  165 aacggagggagtat 178  Q
    |||||| |||||||    
T  1837839 aacggatggagtat 1837826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 3657219 - 3657279
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaa 105  Q
    |||||||||||||||| | || ||||||||||||||  |||||||||||||||||||||||    
T  3657219 ctctctacaataaataggtaaaagtattattgacaaaccaataattaatgttgcattgaaa 3657279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 170
Target Start/End: Original strand, 25929248 - 25929368
Alignment:
Q  50 tacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaat 149  Q
    |||||||||||   ||| |||||||||| ||  ||||| |||||||||| |||||| ||||||| | |||||    |||||||||||||||||||||||     
T  25929248 tacaataaatagataagggtattattgataaatcaatatttaatgttgcgttgaaacttgaaaggggcaagtgaaatgaaacaaaattattctttaaaag 25929347  T
Q  150 gggcaagtattatgaaacgga 170  Q
     | |||||||| |||||||||    
T  25929348 cgacaagtattgtgaaacgga 25929368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 14350565 - 14350510
Alignment:
Q  86 taattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattc 141  Q
    |||||||||||||||||||| || ||||||||||||| | | ||||||||||||||    
T  14350565 taattaatgttgcattgaaactttaaagtgacaagtaatataaaacaaaattattc 14350510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 284426 - 284460
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  284426 tgtgttttctataatacccttaatcatttattatt 284460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 23045463 - 23045429
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  23045463 tgtgttttctataatacccttaatcatttattatt 23045429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40783841 - 40783807
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  40783841 tgtgttttctataatacccttaatcatttattatt 40783807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 47038036 - 47038002
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  47038036 tgtgttttctataatacccttaatcatttattatt 47038002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 51064995 - 51065033
Alignment:
Q  139 ttctttaaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  51064995 ttctttaaaatggacaagtattgtgaaacggagggagta 51065033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 51613516 - 51613450
Alignment:
Q  52 caataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    ||||||||||  ||||||| |||||| || |||| | |||||| ||||||||| |||||||||||||    
T  51613516 caataaatatctaagagtaatattgataaaacaacatttaatgatgcattgaactttgaaagtgaca 51613450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 49756742 - 49756678
Alignment:
Q  46 tctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttga 110  Q
    ||||| |||||||||   ||| |||| |||||||| |||||||||| |||||||||||| |||||    
T  49756742 tctctgcaataaatacttaagggtataattgacaaaacaataattattgttgcattgaactttga 49756678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 40886742 - 40886610
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  40886742 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 40886643  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  40886642 aaaatggacaagtattatgaaacggagggagta 40886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 10285189 - 10285057
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10285189 ctctctacaataaatatgcaag-gtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattcttt 10285091  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||| | ||||||||||||||||||||||||||    
T  10285090 aaaatagacaagtattatgaaacggagggagtat 10285057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 12806985 - 12806852
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |    
T  12806985 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagagacaagtattgtgaaacaaaattattctct 12806886  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  12806885 aaaatggacaagtattatgaaacggagggagtat 12806852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 30720624 - 30720491
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  30720624 ctctctacaataaatatgcaagggtattattgacaagacaataactaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 30720525  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  30720524 aaaatggacaagtattatgaaacggagggagtat 30720491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 36561231 - 36561099
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  36561231 ctctctacaataaatatgcaagggtattattgacaagacaatacttaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 36561132  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  36561131 aaaatggacaagtattatgaaacggagggagta 36561099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 25773795 - 25773928
Alignment:
Q  46 tctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttta 145  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| ||    
T  25773795 tctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgataagtattgtgaaacaaacttattctcta 25773894  T
Q  146 aaatgggcaagtattatgaaacggagggagtatc 179  Q
    |||||| ||||||||||||||||||| |||||||    
T  25773895 aaatggacaagtattatgaaacggagagagtatc 25773928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 37900755 - 37900622
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||     
T  37900755 ctctctgcaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtatcgtgaaacaaaattattcttc 37900656  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||| | |||||||||||||||||| |||||||    
T  37900655 aaaatagacaagtattatgaaacggaaggagtat 37900622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 25683361 - 25683229
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||      
T  25683361 ctctctacaataaatatgtaagggtattattgacaaaacaataattaatgttgcattgaaacttgaaagtgacaagttttatgaaacaaaattattctcc 25683262  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  25683261 aaaatggacaagtattatgaaacggagggagta 25683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 23097856 - 23097723
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||      
T  23097856 ctctctacaataaatatgtaagggtattattgacaagacaataattaatattgcattgaaacatgaaagtaacaagtattgtgaaacaaaattattctcc 23097757  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| |||||||||||||||||| |||||||    
T  23097756 aaaatggacaagtattatgaaacggaaggagtat 23097723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 16983402 - 16983532
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||     
T  16983402 ctctctgcaatagatatgcaagggtattattgaaaagacaataattaatgttgcattgaaacttaaaagtgacaagtattgtgaaacaaaattattcttc 16983501  T
Q  145 aaaatgggcaagtattatgaaacggagggag 175  Q
    ||||| | |||||||||| |||| |||||||    
T  16983502 aaaatagacaagtattataaaacagagggag 16983532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 734471 - 734339
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||||| |||| ||| | |||||||||||||| ||  ||||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||      
T  734471 ctctctataatatataggtaagagtattattgataaaccaataattaatgttgtattgaaacttgaaagtgacaagtaaagtgaaacaaaattattctcc 734372  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||| |||||||| |||||||    
T  734371 aaaatggacaagtattgtgaaacggtgggagta 734339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 11319701 - 11319826
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | |||||||||||| | ||  ||||||||||| ||||||| |||  ||||||||| || ||  |||||||||||||||||| |    
T  11319701 ctctctacaataaataggtaagagtattattaataaaccaataattaatattgcattaaaacctgaaagtgataaataaagtgaaacaaaattattctct 11319800  T
Q  145 aaaatgggcaagtattatgaaacgga 170  Q
    ||||| | ||||||||||||||||||    
T  11319801 aaaatagacaagtattatgaaacgga 11319826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 1056755 - 1056621
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    ||||||||||||||||   |||||||||||||||||   |||||||||||||||||||||| ||||||||||  |||| | ||||| |||||||||||      
T  1056755 ctctctacaataaataaataagagtattattgacaaactaataattaatgttgcattgaaacttgaaagtga-tagtaat-tgaaataaaattattctcc 1056658  T
Q  145 aaaatgggcaagtattatgaaacggagggagtatctt 181  Q
    ||||  | |||||||| ||||||||||||||||||||    
T  1056657 aaaagtgacaagtattgtgaaacggagggagtatctt 1056621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 39071027 - 39071153
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | ||| | |||||||| ||  ||||||||||||||||||||| | || |||||||||||||  ||||||||||||||||||      
T  39071027 ctctctacaataaataggtaagtggattattgataaaccaataattaatgttgcattgatacttaaaagtgacaagtaaagtgaaacaaaattattctca 39071126  T
Q  145 aaaatgggcaagtattatgaaacggag 171  Q
    ||||| | |||||||| |||| |||||    
T  39071127 aaaatagacaagtattgtgaatcggag 39071153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 16054256 - 16054353
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    ||||||||||||||||   ||| |||||||||||||   |||||||||||||||||||||| |||||||||||||  |  ||||| ||||||||||||    
T  16054256 ctctctacaataaatagataagggtattattgacaaactaataattaatgttgcattgaaacttgaaagtgacaaccaaagtgaaccaaaattattct 16054353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 7277552 - 7277486
Alignment:
Q  48 tctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagt 114  Q
    ||||||||||||| | ||| | |||||||||||||||||||||||| |||||||||||||| |||||    
T  7277552 tctacaataaataagtaagggcattattgacaagacaataattaattttgcattgaaatttaaaagt 7277486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 11795396 - 11795318
Alignment:
Q  64 aagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    |||||||||||||| ||  | ||||||||||||||||||||| |||||||||| || ||  ||||||||||||||||||    
T  11795396 aagagtattattgataaacctataattaatgttgcattgaaacttgaaagtgataaataaagtgaaacaaaattattct 11795318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 11797694 - 11797768
Alignment:
Q  48 tctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagta 122  Q
    ||||||||||||| ||||| |||| ||||||||   |||||||||||||| |||||||||||||| |||||||||    
T  11797694 tctacaataaataagcaagggtatcattgacaaactaataattaatgttgtattgaaatttgaaaatgacaagta 11797768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 177
Target Start/End: Original strand, 26168064 - 26168185
Alignment:
Q  55 taaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatgggca 154  Q
    |||||| ||||| |||||||| ||||   ||| |||||| ||||||||||| ||||||||||||| ||  |||||||||||||||||| |||||  | ||    
T  26168064 taaataggcaag-gtattattaacaaacaaatcattaatcttgcattgaaacttgaaagtgacaattaaagtgaaacaaaattattctctaaaaacgaca 26168162  T
Q  155 agtattatgaaacggagggagta 177  Q
     ||||  ||||||||| ||||||    
T  26168163 tgtatcgtgaaacggaaggagta 26168185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 30403071 - 30402991
Alignment:
Q  68 gtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaa 148  Q
    |||||||||||||  ||||||||||| ||| ||||||| || |||||||||||||   ||||| ||||||||||| |||||    
T  30403071 gtattattgacaaaccaataattaattttgtattgaaacttaaaagtgacaagtaaaatgaaataaaattattctctaaaa 30402991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 12305687 - 12305736
Alignment:
Q  63 caagagtattattgacaagacaataattaatgttgcattgaaatttgaaa 112  Q
    |||| ||||||||||||| |||||||| |||||||||||||| |||||||    
T  12305687 caagggtattattgacaaaacaataatcaatgttgcattgaactttgaaa 12305736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 15629320 - 15629376
Alignment:
Q  84 aataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattatt 140  Q
    ||||||||||| ||||||||||||| ||| | |||||||  ||||||||||||||||    
T  15629320 aataattaatgctgcattgaaatttaaaaataacaagtaaagtgaaacaaaattatt 15629376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10285241 - 10285207
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  10285241 tgtgttttctataatacccttaatcatttattatt 10285207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12807037 - 12807003
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  12807037 tgtgttttctataatacccttaatcatttattatt 12807003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25773742 - 25773776
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  25773742 tgtgttttctataatacccttaatcatttattatt 25773776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 25786001 - 25785928
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    ||||||||||||||||  |||| ||| || || ||| |||| | ||||||||| |||||| |||||||||||||    
T  25786001 ctctctacaataaataatcaagggtaataatgccaaaacaacatttaatgttgtattgaactttgaaagtgaca 25785928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 33239388 - 33239347
Alignment:
Q  71 ttattgacaagacaataattaatgttgcattgaaatttgaaa 112  Q
    |||||||||| |||| |||||||||||||||||| |||||||    
T  33239388 ttattgacaaaacaaaaattaatgttgcattgaactttgaaa 33239347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 1297900 - 1297936
Alignment:
Q  82 acaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    |||||| |||||||||||||||| |||||||||||||    
T  1297900 acaatatttaatgttgcattgaattttgaaagtgaca 1297936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 21638914 - 21638990
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagt 121  Q
    ||||| |||||| ||| | ||||| |||||||||||  ||||| ||||||||||||| ||| || || |||||||||    
T  21638914 ctctccacaatatataggtaagagaattattgacaaaccaatatttaatgttgcatttaaacttaaatgtgacaagt 21638990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 42911607 - 42911571
Alignment:
Q  82 acaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    |||||| |||||||||||||||| |||||||||||||    
T  42911607 acaatatttaatgttgcattgaactttgaaagtgaca 42911571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 27813956 - 27814089
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  27813956 ctctctacaataaatatgcaagggtattattgacaacacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 27814055  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  27814056 aaaatggacaagtattatgaaacggagggagtat 27814089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 36453256 - 36453123
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  36453256 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 36453157  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||| ||||||    
T  36453156 aaaatggacaagtattatgaaacggagagagtat 36453123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 25614485 - 25614349
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |    
T  25614485 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttaaaagtgacaagtattgtgaaacaaaattattctct 25614386  T
Q  145 aaaatgggcaagtattatgaaacggagggagtatctt 181  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  25614385 aaaatggacaattattatgaaacggagggagtatctt 25614349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 47110595 - 47110728
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  47110595 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 47110694  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||   |||||||||||||||||||||||||    
T  47110695 aaaatgaataagtattatgaaacggagggagtat 47110728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 10981653 - 10981785
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  10981653 ctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctct 10981752  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| ||| |||||||||| ||||||||||    
T  10981753 aaaatggacaaatattatgaaatggagggagta 10981785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 40349107 - 40349239
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||| |    
T  40349107 ctctctacaataaatatgcaagggtattattgaccaaacaataattaatgttgcattgaaacttaaaagtgacaagtattgtgaaac-aaattattctct 40349205  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  40349206 aaaatggacaagtattatgaaacggagggagtat 40349239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 16662241 - 16662370
Alignment:
Q  48 tctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaa 147  Q
    ||||||||||||| | ||| |||||| ||||||  ||||||||||||||||||||||| |||||||||||||||| | | |||||||||||||||| |||    
T  16662241 tctacaataaataggtaagggtattaatgacaaatcaataattaatgttgcattgaaacttgaaagtgacaagtaatttaaaacaaaattattcttcaaa 16662340  T
Q  148 atgggcaagtattatgaaacggagggagta 177  Q
    |  | |||||||| ||||| ||||||||||    
T  16662341 agtgacaagtattgtgaaatggagggagta 16662370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 17636601 - 17636730
Alignment:
Q  48 tctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaa 147  Q
    ||||||||||||| | ||| |||||| ||||||  ||||||||||||||||||||||| |||||||||||||||| | | |||||||||||||||| |||    
T  17636601 tctacaataaataggtaagggtattaatgacaaatcaataattaatgttgcattgaaacttgaaagtgacaagtaatttaaaacaaaattattcttcaaa 17636700  T
Q  148 atgggcaagtattatgaaacggagggagta 177  Q
    |  | |||||||| ||||| ||||||||||    
T  17636701 agtgacaagtattgtgaaatggagggagta 17636730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 27941113 - 27941019
Alignment:
Q  48 tctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    ||||||||||||| | ||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||    
T  27941113 tctacaataaataagtaagggtattattgacaagccaataattaatgttgcaatgaaacttgaaagtgacaagtaatgtgaaacaaaattgttct 27941019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 3091658 - 3091761
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||| ||| |||||||||||||  ||||| ||||||||||||||||| || ||| |||||||||  |||||||||||||||||||     
T  3091658 ctctctacaataaatatgtaagggtattattgacaaaccaatatttaatgttgcattgaaacttaaaaatgacaagtaaagtgaaacaaaattattctta 3091757  T
Q  145 aaaa 148  Q
    ||||    
T  3091758 aaaa 3091761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 24456897 - 24456794
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||| ||| ||||| |||||||||| ||   | || ||||||||||||||||| |||| |||||||||||  || ||||||||||||||||     
T  24456897 ctctctacaatacataggcaagggtattattgataaattagtagttaatgttgcattgaaacttgagagtgacaagtaaagttaaacaaaattattcttc 24456798  T
Q  145 aaaa 148  Q
    ||||    
T  24456797 aaaa 24456794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 3498879 - 3498813
Alignment:
Q  53 aataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaa 119  Q
    |||||||||| ||||||||||| || ||  ||||||||||| ||||||||||| ||||| |||||||    
T  3498879 aataaatatgtaagagtattatcgataaatcaataattaattttgcattgaaagttgaatgtgacaa 3498813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 7743530 - 7743427
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||    |||||||| ||| ||  ||||||||||  ||||||||||| || ||| |||||| ||  |||||| ||||||||||||     
T  7743530 ctctctacaataaatatatctgagtattactgagaatccaataattaacattgcattgaaacttaaaaatgacaaataaagtgaaataaaattattcttc 7743431  T
Q  145 aaaa 148  Q
    ||||    
T  7743430 aaaa 7743427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 16360549 - 16360655
Alignment:
Q  72 tattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaatgggcaagtattatgaaacggag 171  Q
    |||||||||  ||||| ||||||||| ||||||| ||||||||||||||||  ||||| | ||||||||||  ||||  | ||| |||| |||||| ||     
T  16360549 tattgacaaaccaatatttaatgttgtattgaaacttgaaagtgacaagtaaagtgaagc-aaattattctccaaaaacgacaaatattgtgaaacagaa 16360647  T
Q  172 ggagtatc 179  Q
    ||||||||    
T  16360648 ggagtatc 16360655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 6737252 - 6737302
Alignment:
Q  62 gcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaa 112  Q
    ||||| |||||||||| || |||||||||||| |||||||||| |||||||    
T  6737252 gcaagggtattattgataaaacaataattaatattgcattgaactttgaaa 6737302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 8380083 - 8380157
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaa 119  Q
    |||||||||||||||| | ||| ||||| || ||||  |||||| |||||||| ||||||| || ||||||||||    
T  8380083 ctctctacaataaataagtaagggtatttttaacaaaccaataactaatgttgtattgaaacttaaaagtgacaa 8380157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10981601 - 10981635
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  10981601 tgtgttttctataatacccttaatcatttattatt 10981635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27813904 - 27813938
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  27813904 tgtgttttctataatacccttaatcatttattatt 27813938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47110542 - 47110576
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  47110542 tgtgttttctataatacccttaatcatttattatt 47110576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 46563254 - 46563327
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    ||||||||||||||||  |||| ||| || || ||| |||||| ||||||||| | |||| |||||||||||||    
T  46563254 ctctctacaataaataatcaagggtaataatgtcaaaacaatatttaatgttgtactgaactttgaaagtgaca 46563327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 2910921 - 2910853
Alignment:
Q  115 gacaagtattgtgaaacaaaattattctttaaaatgggcaagtattatgaaacggagggagtatctttt 183  Q
    |||| ||||| ||||||||||   ||||||||||| | || ||||| ||||||||||||||||| ||||    
T  2910921 gacatgtattttgaaacaaaaaatttctttaaaatagacatgtattttgaaacggagggagtatatttt 2910853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 307 - 438
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | |    
T  307 ctctctacaataaatatgcaagggtattattgacaagacaata-ttaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattttct 405  T
Q  145 aaaatgggcaagtattatgaaacggagggagta 177  Q
    ||||||| |||||||||||||||||||||||||    
T  406 aaaatggacaagtattatgaaacggagggagta 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 45601 - 45730
Alignment:
Q  48 tctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaa 147  Q
    ||||||||||||||  |||  ||||||||| || |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  45601 tctacaataaatatttaaggttattattgataatacaataattaatattgcattgaaatttgaaagagacatgtattgtgaaacaaaattattctctaaa 45700  T
Q  148 atgggcaagtattatgaaacggagggagta 177  Q
    |||| |||||||||||||||||||||||||    
T  45701 atggacaagtattatgaaacggagggagta 45730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 399 - 287
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||||| ||   ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |    
T  399 ctctctacaataaatatgtaatgatattattgacaagacaataattaatgttgcattaaaatttaaaagtgacaagtattgtgaaacaaaattattctct 300  T
Q  145 aaaatgggcaagt 157  Q
    ||||||| |||||    
T  299 aaaatggacaagt 287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 7813 - 7946
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||| ||||||||||| | |||||||||||||||||  | ||||||||||||||||| ||| |||||||||||||||| ||||||  |||||||||||||    
T  7813 ctctttacaataaataggtaagagtattattgacaaaccgataattaatgttgcattaaaacttgaaagtgacaagtaatgtgaattaaaattattcttt 7912  T
Q  145 aaaatgggcaagtattatgaaacggagggagtat 178  Q
    ||||  | |||||||| |||||| || |||||||    
T  7913 aaaaacgacaagtattgtgaaacagatggagtat 7946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 7032 - 6911
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||||| | |||||||||||||||| | ||||||||||||||||||||||| || |||  ||||| || | |||||||||||||||||      
T  7032 ctctctacaataaataagtaagagtattattgacacgtcaataattaatgttgcattgaaactt-aaacggacaaataatatgaaacaaaattattctcc 6934  T
Q  145 aaaatgggcaagtattatgaaac 167  Q
    ||||  | |||||||| ||||||    
T  6933 aaaaacgacaagtattgtgaaac 6911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 65274 - 65200
Alignment:
Q  68 gtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    |||||||||||||  ||||||||||| |||||||||||||| ||||||||||||| | |||||||||||||||||    
T  65274 gtattattgacaaaccaataattaatattgcattgaaatttaaaagtgacaagtaatatgaaacaaaattattct 65200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 71231 - 71350
Alignment:
Q  48 tctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaa 147  Q
    ||||||||||||| | ||| |||| ||| ||||  ||||||||||| ||||||| ||| || ||||||||||||| ||||||| |||||||||||| |||    
T  71231 tctacaataaataggtaagggtataattaacaaaccaataattaattttgcattcaaacttaaaagtgacaagtaatgtgaaataaaattattcttcaaa 71330  T
Q  148 atgggcaagtattatgaaac 167  Q
    |  | |||||||| ||||||    
T  71331 aacgacaagtattgtgaaac 71350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 15455 - 15319
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattcttt 144  Q
    |||||||||||||| | | ||| |||||||||||||  | ||||||||||||||||||||| || ||||| ||| |||  ||||||||| ||| |||  |    
T  15455 ctctctacaataaaaaagtaagcgtattattgacaaaccgataattaatgttgcattgaaacttaaaagttacatgtaaagtgaaacaatattgttcact 15356  T
Q  145 aaaatgggcaagtattatgaaacggagggagtatctt 181  Q
    |||||   ||| |||| |||||| ||| |||||||||    
T  15355 aaaattatcaaatattgtgaaacagagtgagtatctt 15319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 234399 - 234332
Alignment:
Q  53 aataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagta 122  Q
    |||||||||  ||||||||||||||||| ||| |||||||||||||||  || ||||||| |||||||||    
T  234399 aataaatatttaagagtattattgacaaaacagtaattaatgttgcat--aactttgaaaatgacaagta 234332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 252706 - 252633
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    ||||||||||||||||  |||| ||| ||  ||||| |||||| ||||||||| |||||| |||||||||||||    
T  252706 ctctctacaataaataatcaagggtaataaagacaaaacaatatttaatgttgtattgaactttgaaagtgaca 252633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 147263 - 147330
Alignment:
Q  51 acaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgaca 118  Q
    |||||||||||  ||| ||| |||||| || |||| | |||||||||||||||| |||||||||||||    
T  147263 acaataaatatctaagggtaatattgataaaacaacatttaatgttgcattgaactttgaaagtgaca 147330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 83 - 49
Alignment:
Q  1 tgtgttttctataatacccttaataatttattatt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  83 tgtgttttctataatacccttaatcatttattatt 49  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 1110 - 1183
Alignment:
Q  69 tattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 142  Q
    ||||||||| ||  |||||||||||||||||| |||| || ||| |||||||||   | |||||||||||||||    
T  1110 tattattgataaaccaataattaatgttgcatcgaaacttaaaaatgacaagtaaaataaaacaaaattattct 1183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 10887 - 10964
Alignment:
Q  45 ctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaatttgaaagtgacaagta 122  Q
    ||||| |||||||||| | |||| ||||||||||||  ||||| ||||||||||||  ||| || || ||||||||||    
T  10887 ctctccacaataaataggtaagaatattattgacaaatcaatatttaatgttgcatataaacttaaatgtgacaagta 10964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 1106 - 1042
Alignment:
Q  84 aataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaa 148  Q
    |||| ||||||||| |||||| ||||||| |||||  ||   |||||||||||||||||||||||    
T  1106 aatatttaatgttgtattgaactttgaaaatgacagttaaattgaaacaaaattattctttaaaa 1042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 6523 - 6587
Alignment:
Q  84 aataattaatgttgcattgaaatttgaaagtgacaagtattgtgaaacaaaattattctttaaaa 148  Q
    |||| ||||||||| |||||| ||||||| |||||  ||   |||||||||||||||||||||||    
T  6523 aatatttaatgttgtattgaactttgaaaatgacagttaaattgaaacaaaattattctttaaaa 6587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University