View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3252_low_28 (Length: 257)
Name: NF3252_low_28
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_28 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 257
Target Start/End: Original strand, 12795923 - 12796178
Alignment:
| Q |
2 |
caaacagaccccaagactaacggtagtggctggatatctatttccttcgtagtattgttggcccaacatcctacaaaagaaataagaaatccaactgcta |
101 |
Q |
| |
|
|||||||||||||||||| || |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
12795923 |
caaacagaccccaagactgacagtagcggctggatatctatttccttggtagtattgttggcccaacatcctaccaaagaaatacgaaatccaactgcta |
12796022 |
T |
|
| Q |
102 |
ccatgagtcagcagtactgtaacccaaattgcagatagaagctctcaagctgaactggagatgaatgatcatagtacaaagaaacaaagtcaagcagttt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12796023 |
ccatgagtcagcagtactgtaacccaaattgcagatggaagctctcaagctgaactggagatgaatgatcatagcacaaagaaacaaagtcaagcagttt |
12796122 |
T |
|
| Q |
202 |
caaatagagcaaataatatgaatggtcactcagaaaagaacataaaacaacaatta |
257 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
12796123 |
caaatagagcaactaatatgaatggtgactctgaaaagaacataaaacaacaatta |
12796178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University