View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3252_low_3 (Length: 539)

Name: NF3252_low_3
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3252_low_3
NF3252_low_3
[»] chr7 (4 HSPs)
chr7 (230-461)||(45807607-45807838)
chr7 (86-160)||(45807463-45807537)
chr7 (41-86)||(16258914-16258959)
chr7 (41-86)||(16254204-16254249)
[»] chr6 (2 HSPs)
chr6 (41-87)||(26128923-26128969)
chr6 (41-86)||(26135837-26135882)
[»] scaffold0488 (1 HSPs)
scaffold0488 (41-86)||(11162-11207)
[»] scaffold0014 (2 HSPs)
scaffold0014 (41-87)||(98199-98245)
scaffold0014 (41-86)||(93561-93606)
[»] chr4 (2 HSPs)
chr4 (41-87)||(13985672-13985718)
chr4 (41-86)||(13990311-13990356)
[»] chr3 (4 HSPs)
chr3 (41-86)||(31192844-31192889)
chr3 (41-86)||(31197555-31197600)
chr3 (41-86)||(52770716-52770761)
chr3 (41-86)||(52775424-52775469)
[»] scaffold0013 (1 HSPs)
scaffold0013 (43-85)||(245194-245236)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 230 - 461
Target Start/End: Original strand, 45807607 - 45807838
Alignment:
Q  230 gtagattcaattgcagcatgaatcgaaaatcttgaagggaagcaatcaagtgtaatgctgtaatgctatgcaatcattttccaggattcaatagagcaga 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45807607 gtagattcaattgcagcatgaatcgaaaatcttgaagggaagcaatcaagtgtaatgctgtaatgctatgcaatcattttccaggattcaatagagcaga 45807706  T
Q  330 gaatctcaagcagtggtattccggaaattataattttctaaaaccaagcagtcgtaatcgatcatggcaaacccagaaaattgagcaattctaattttct 429  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45807707 gaatctgaagcagtggtattccggaaattataattttctaaaaccaagcagtcgtaatcgatcatggcaaacccagaaaattgagcaattctaattttct 45807806  T
Q  430 aaattctagcagttgtgaacgttttccaggaa 461  Q
    ||||||||||||||||||||||||||||||||    
T  45807807 aaattctagcagttgtgaacgttttccaggaa 45807838  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 45807463 - 45807537
Alignment:
Q  86 atggaacattaacaggaagtacattaataggaagttcaagaaacgattgaattgcagaataaaagaagacaagat 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45807463 atggaacattaacaggaagtacattaataggaagttcaagaaacgattgaattgcagaataaaagaagacaagat 45807537  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 16258959 - 16258914
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaaca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16258959 ttctccaagctatctaattattacaaacaaagatacaattttaaca 16258914  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 16254249 - 16254204
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaaca 86  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  16254249 ttctctaagctatctaattattacaaacaaagatacaattttaaca 16254204  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 26128969 - 26128923
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaacat 87  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  26128969 ttctccaagctatctaattataacaaacaaagatacaattttaacat 26128923  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 26135882 - 26135837
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaaca 86  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  26135882 ttctccaagctatctaattataacaaacaaagatacaattttaaca 26135837  T

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Target: scaffold0488 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 11162 - 11207
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaaca 86  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  11162 ttctccaagctatctaattataacaaacaaagatacaattttaaca 11207  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 98199 - 98245
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaacat 87  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  98199 ttctccaagctatctaattataacaaactaagatacaattttaacat 98245  T

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Target: scaffold0014; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 93561 - 93606
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaaca 86  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  93561 ttctccaagctatctaattataacaaactaagatacaattttaaca 93606  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 13985718 - 13985672
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaacat 87  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  13985718 ttctccaagctatctaattataacaaactaagatacaattttaacat 13985672  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 13990356 - 13990311
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaaca 86  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  13990356 ttctccaagctatctaattataacaaactaagatacaattttaaca 13990311  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 31192844 - 31192889
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaaca 86  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  31192844 ttctccaagctatctaattataacaaactaagatacaattttaaca 31192889  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 31197555 - 31197600
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaaca 86  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  31197555 ttctccaagctatctaattataacaaactaagatacaattttaaca 31197600  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 52770761 - 52770716
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaaca 86  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  52770761 ttctccaagctatctaattataacaaactaagatacaattttaaca 52770716  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 52775469 - 52775424
Alignment:
Q  41 ttctccaagctatctaattattacaaacaaagatacaattttaaca 86  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  52775469 ttctccaagctatctaattataacaaactaagatacaattttaaca 52775424  T

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Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 245194 - 245236
Alignment:
Q  43 ctccaagctatctaattattacaaacaaagatacaattttaac 85  Q
    ||||||||||||||||||| |||||| ||||||||||||||||    
T  245194 ctccaagctatctaattataacaaactaagatacaattttaac 245236  T

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