View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_low_31 (Length: 250)
Name: NF3252_low_31
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 33916102 - 33916341
Alignment:
| Q |
1 |
attccattagagttaacatctcttcctcagttagaaactcttctactcgatcagaaccagctcaccggtcaaattccatcggatataacatcatggaagt |
100 |
Q |
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| T |
33916102 |
attccattagagttaacatctcttcctcggttagaaactcttctactcgatcagaaccagctcaccggtcaaattccatcggatataacatcatggaagt |
33916201 |
T |
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| Q |
101 |
ctctagtaacattaaacttgagccacaatcaactatctggagaaatacctgatgcaatttgtcggttacgttcacttagtatgttagacttatcagaaaa |
200 |
Q |
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| T |
33916202 |
ctctagtaacattaaacttgagccacaatcaactatctggagaaatacctgatgcaatttgtcggttacgttcacttagtatgttagacttatcagaaaa |
33916301 |
T |
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| Q |
201 |
ccagatctcaggccgaattccgcctcaactagcacctatg |
240 |
Q |
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| T |
33916302 |
ccagatctcaggccgaattccgcctcaactagcacctatg |
33916341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 24792267 - 24792117
Alignment:
| Q |
9 |
agagttaacatctcttcctcagttagaaactcttctactcgatcagaaccagctcaccggtcaaattccatcggatataacatcatggaagtctctagta |
108 |
Q |
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|||||||||||| ||||| | ||| ||||||| | || |||||||| ||| |||| |||||||||||||| ||||||| |||||||||||| ||||| |
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| T |
24792267 |
agagttaacatcacttccaaaattaacaactcttttgcttgatcagaatcagttcactggtcaaattccatctgatataatatcatggaagtccttagta |
24792168 |
T |
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| Q |
109 |
acattaaacttgagccacaatcaactatctggagaaatacctgatgcaatt |
159 |
Q |
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|| | || |||||||| || ||||| |||||| |||| || ||||||||| |
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| T |
24792167 |
actcttaatttgagccagaaccaactttctggacaaattccagatgcaatt |
24792117 |
T |
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