View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3252_low_35 (Length: 242)

Name: NF3252_low_35
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3252_low_35
NF3252_low_35
[»] chr4 (3 HSPs)
chr4 (1-235)||(43942708-43942942)
chr4 (118-203)||(22073958-22074043)
chr4 (5-82)||(2501056-2501135)
[»] chr3 (2 HSPs)
chr3 (1-235)||(5884995-5885229)
chr3 (1-123)||(54946124-54946246)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-235)||(10741-10975)
[»] chr6 (3 HSPs)
chr6 (1-235)||(16856468-16856716)
chr6 (123-235)||(26615892-26616004)
chr6 (123-235)||(26721820-26721932)
[»] chr7 (1 HSPs)
chr7 (1-123)||(47933322-47933444)
[»] chr1 (1 HSPs)
chr1 (102-212)||(51167421-51167531)
[»] chr2 (3 HSPs)
chr2 (111-210)||(653324-653423)
chr2 (92-231)||(40072087-40072225)
chr2 (1-51)||(26230828-26230878)
[»] chr5 (2 HSPs)
chr5 (103-235)||(27280829-27280953)
chr5 (169-232)||(32504279-32504340)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 43942708 - 43942942
Alignment:
Q  1 atgtcaataacacctaaccatctttctacacttttcctctttcatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43942708 atgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaa 43942807  T
Q  101 acattgtgtgtataaatatgtgattttgtgcaccaaattttgggatttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43942808 acattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtat 43942907  T
Q  201 tactgttttttccactcattttaactcttcatctc 235  Q
    |||||||||||||||||||||||||||||||||||    
T  43942908 tactgttttttccactcattttaactcttcatctc 43942942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 22073958 - 22074043
Alignment:
Q  118 atgtgattttgtgcaccaaattttgggatttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattac 203  Q
    |||| |||||| ||||||||||||||| ||||||||||||||| ||||| |||||||||  || |||||||||||| ||| |||||    
T  22073958 atgtaattttgcgcaccaaattttgggttttgttcatcaccactttcaaacaacaattgtataattcatcttcaattttgaattac 22074043  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 2501135 - 2501056
Alignment:
Q  5 caataacacctaacca--tctttctacacttttcctctttcatgctatctaaatgttctaatcttatatcatgtttttta 82  Q
    |||||||||| |||||  |||||||||| ||||||||   ||||||||| ||||||||||||||||| ||||||||||||    
T  2501135 caataacaccgaaccacatctttctacatttttcctcaaccatgctatccaaatgttctaatcttatttcatgtttttta 2501056  T

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Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5885229 - 5884995
Alignment:
Q  1 atgtcaataacacctaaccatctttctacacttttcctctttcatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5885229 atgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaa 5885130  T
Q  101 acattgtgtgtataaatatgtgattttgtgcaccaaattttgggatttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5885129 acattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtat 5885030  T
Q  201 tactgttttttccactcattttaactcttcatctc 235  Q
    |||||||||||||||||||||||||||||||||||    
T  5885029 tactgttttttccactcattttaactcttcatctc 5884995  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 54946246 - 54946124
Alignment:
Q  1 atgtcaataacacctaaccatctttctacacttttcctctttcatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  54946246 atgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttataatcttatatcatgttttttactatcgtgtcattgagaa 54946147  T
Q  101 acattgtgtgtataaatatgtga 123  Q
    |||||||||||||||||||||||    
T  54946146 acattgtgtgtataaatatgtga 54946124  T

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Target: scaffold0182 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10975 - 10741
Alignment:
Q  1 atgtcaataacacctaaccatctttctacacttttcctctttcatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10975 atgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaa 10876  T
Q  101 acattgtgtgtataaatatgtgattttgtgcaccaaattttgggatttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtat 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10875 acattgtgtatataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtct 10776  T
Q  201 tactgttttttccactcattttaactcttcatctc 235  Q
    |||||||||||||||||||||||||| ||||||||    
T  10775 tactgttttttccactcattttaacttttcatctc 10741  T

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Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 16856468 - 16856716
Alignment:
Q  1 atgtcaataacacctaaccatctttctacacttttcctctttcatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaa 100  Q
    |||||||||||||| ||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  16856468 atgtcaataacaccaaaccaactttctacacttttcctctaccatgctatctaaatgttctaatctcatatcatgttttttactatcacatcattgagaa 16856567  T
Q  101 acattgtgtgtataaatatgtgattttgt--------------gcaccaaattttgggatttgttcatcaccacattcaagcaacaattggttagttcat 186  Q
    |||||||||||||||||||||||||||||              ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  16856568 acattgtgtgtataaatatgtgattttgtgcaccaaattttgggcaccaaattttgggttttgttcatcaccgcattcaagcaacaattggttagttcat 16856667  T
Q  187 cttcaatattgtattactgttttttccactcattttaactcttcatctc 235  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16856668 cttcaatattgtattacttttttttccactcattttaactcttcatctc 16856716  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 26616004 - 26615892
Alignment:
Q  123 attttgtgcaccaaattttgggatttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccactcatttt 222  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||  ||||||||||||| ||||||||||| |||||||| |||| ||| ||||||||||    
T  26616004 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactcatttt 26615905  T
Q  223 aactcttcatctc 235  Q
    |||||||||||||    
T  26615904 aactcttcatctc 26615892  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 26721932 - 26721820
Alignment:
Q  123 attttgtgcaccaaattttgggatttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccactcatttt 222  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||  ||||||||||||| ||||||||||| |||||||| |||| ||| ||||||||||    
T  26721932 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactcatttt 26721833  T
Q  223 aactcttcatctc 235  Q
    |||||||||||||    
T  26721832 aactcttcatctc 26721820  T

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Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 47933444 - 47933322
Alignment:
Q  1 atgtcaataacacctaaccatctttctacacttttcctctttcatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  47933444 atgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttataatcttatatcatgttttttactatcgtgtcattgagaa 47933345  T
Q  101 acattgtgtgtataaatatgtga 123  Q
    |||||||||||||||||||||||    
T  47933344 acattgtgtgtataaatatgtga 47933322  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 51167531 - 51167421
Alignment:
Q  102 cattgtgtgtataaatatgtgattttgtgcaccaaattttgggatttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtatt 201  Q
    ||||||||||||||||  |||| |||||||| ||||||||||  ||||||||||||||| | |||||||| ||||  | |||| |||||||| || ||||    
T  51167531 cattgtgtgtataaattcgtgaatttgtgcagcaaattttggattttgttcatcaccacttccaagcaactattgaattgttcctcttcaattttctatt 51167432  T
Q  202 actgttttttc 212  Q
    | |||||||||    
T  51167431 attgttttttc 51167421  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 653423 - 653324
Alignment:
Q  111 tataaatatgtgattttgtgcaccaaattttgggatttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttt 210  Q
    ||||||||||| ||||| ||||||||| |||||| |||||||||||| || ||||||||| |||||| | |  ||||||| || |||||||| |||||||    
T  653423 tataaatatgttattttttgcaccaaagtttgggttttgttcatcacaactttcaagcaataattggatggaacatcttcgattttgtattattgttttt 653324  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 40072225 - 40072087
Alignment:
Q  92 cattgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggatttgttcatcaccacattcaagcaacaattggttagttcatcttca 191  Q
    |||||| ||| ||||||||||||| |||||  |||  | |||||||||||||| ||||||  ||| | | ||||||||| |||||| || ||||||||||    
T  40072225 cattgaaaaagattgtgtgtataagtatgtagtttctttcaccaaattttgggttttgttgttcatccctttcaagcaataattggataattcatcttca 40072126  T
Q  192 atattgtattactgttttttccactcattttaactcttca 231  Q
    || ||||||||||  || ||||||||| ||| ||||||||    
T  40072125 attttgtattact-cttattccactcacttttactcttca 40072087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26230878 - 26230828
Alignment:
Q  1 atgtcaataacacctaaccatctttctacacttttcctctttcatgctatc 51  Q
    |||||||||||||| |||||| |||||||||||||| ||| ||||||||||    
T  26230878 atgtcaataacaccaaaccatgtttctacacttttcgtctatcatgctatc 26230828  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 235
Target Start/End: Complemental strand, 27280953 - 27280829
Alignment:
Q  103 attgtgtgtataaatatgtgattttgtgcaccaaattttgggatttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtatta 202  Q
    |||||| ||||||||||||||||||||| ||       || | ||||| ||||||||| ||||||||| |||||| ||||||||||||||| || ||||     
T  27280953 attgtgcgtataaatatgtgattttgtgtac-------tgagttttgtccatcaccactttcaagcaataattggatagttcatcttcaattttatattg 27280861  T
Q  203 ctgttttttccactcattttaactcttcatctc 235  Q
     || |||||||| ||| |||  |||||||||||    
T  27280860 atg-tttttccagtcactttttctcttcatctc 27280829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 32504279 - 32504340
Alignment:
Q  169 aacaattggttagttcatcttcaatattgtattactgttttttccactcattttaactcttcat 232  Q
    ||||||||| ||||| ||||||||| |||||||| ||||||  ||||||| ||| |||||||||    
T  32504279 aacaattggatagtttatcttcaattttgtattattgtttt--ccactcacttttactcttcat 32504340  T

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