View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_low_37 (Length: 238)
Name: NF3252_low_37
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_37 |
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| [»] chr5 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 37836788 - 37836566
Alignment:
| Q |
16 |
caatgttcccatcgatcgaggaatttttcctccaaacaaatttccaccaagttgtaactcgcggaggttggtaaattctgccaaaaaccctgggatacct |
115 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37836788 |
caatgttcccatcgatcgaggaattttgcctccaaacaaatttccaccaagatgtaactcgcggaggttggtaaattctgccaaaaactctgggatacct |
37836689 |
T |
|
| Q |
116 |
ccagtgaagtaattttctcttaaaatcaatgtggttatatttctccaacttctcaaacttgatggaagtgttccatttaggaaattgaatcccacatcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37836688 |
ccagtgaagtaattttctcttaaaatcaatgtggttatatttctccaacttctcaaacttgatgggagtgttccatttaggaaattgaatcccacatcaa |
37836589 |
T |
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| Q |
216 |
actgatccattttagaacaattt |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
37836588 |
actgatccattttagaacaattt |
37836566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 37850151 - 37849938
Alignment:
| Q |
26 |
atcgatcg-aggaatttttcctccaaacaaatttccaccaagttgtaactcgcggaggttggtaaattctgccaaaaaccctgggatacctccagtgaag |
124 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | || |||||||||||||||||||||||||||| |
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| T |
37850151 |
atcgatcgcaggaattttgcctccaaacaaatttccaccaagttgtaactcgcggaggttgttaaaatttggcaaaaaccctgggatacctccagtgaag |
37850052 |
T |
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| Q |
125 |
taattttctcttaaaatcaatgtggttatatttctccaacttctcaaacttgatggaagtgttccatttaggaaattgaatcccacatcaaactgatcca |
224 |
Q |
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| T |
37850051 |
taattttctcttaaaatcaatgtggttatgtttctccaacttcccaaacttgatgggactgatccatttaggaaattgaatcccacatcaaaatgatcca |
37849952 |
T |
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| Q |
225 |
ttttagaacaattt |
238 |
Q |
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|||||| ||||||| |
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| T |
37849951 |
ttttagtacaattt |
37849938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 37842407 - 37842198
Alignment:
| Q |
16 |
caatgttcccatcgatcgaggaatttttcctccaaacaaatttccaccaagttgtaactcgcggaggttggtaaattctgccaaaaaccctgggatacct |
115 |
Q |
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||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |||||| || |||||| ||||||||||| |
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| T |
37842407 |
caatgttacaatcgatcgaggaatttttcctccaagcaaatttccaccaagttgtaactcacgaaggtttctaaatttagctaaaaactctgggatacct |
37842308 |
T |
|
| Q |
116 |
ccagtgaagtaattttctcttaaaatcaatgtggttatatttctccaacttctcaaacttgatggaagtgttccatttaggaaattgaatcccacatcaa |
215 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||||||||||||||||| | ||||| |
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| T |
37842307 |
cctgtgaagtaattttctcttaaaatcaatgtggttatgtttgtccaacttctcaaatttgatgggagtgatccatttaggaaattgaatcctatatcaa |
37842208 |
T |
|
| Q |
216 |
actgatccat |
225 |
Q |
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| ||||||| |
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| T |
37842207 |
aacgatccat |
37842198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 37831084 - 37830870
Alignment:
| Q |
16 |
caatgttcccatcgatcgaggaatttttcctccaaacaaatttccaccaagttgtaactcgcggaggttggtaaattctgccaaaaaccctgggatacct |
115 |
Q |
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|||||| |||| | |||||||||||| ||||||| |||||||||||| ||||||||||| || |||||| ||||||||| ||||||||||||||||||| |
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| T |
37831084 |
caatgtccccaaccatcgaggaatttcgcctccaagcaaatttccacctagttgtaactcacgaaggttgctaaattctgtcaaaaaccctgggatacct |
37830985 |
T |
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| Q |
116 |
ccagtgaagtaattttctcttaaaatcaatgtggttatatttctccaacttctcaaacttgatggaagtgttccatttaggaaattgaatcccacatcaa |
215 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| |
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| T |
37830984 |
ccagtgaagtaattttctctgaaaatcaatgtagttatgcgtgcccaacttctcaaacttgatgggagtgatccatttaagaaattgaatcccacatcaa |
37830885 |
T |
|
| Q |
216 |
actgatccattttag |
230 |
Q |
| |
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| |||||||||||| |
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| T |
37830884 |
aacgatccattttag |
37830870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 36865535 - 36865313
Alignment:
| Q |
16 |
caatgttcccatcgatcgaggaatttttcctccaaacaaatttccaccaagttgtaactcgcggaggttggtaaattctgccaaaaaccctgggatacct |
115 |
Q |
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|||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |
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| T |
36865535 |
caatgttcccattgatcgaggaattttgcctccgaacgaatttccaccaagttgtaactcactaaggttgctaaattctgccaaaaaccctgggataccc |
36865436 |
T |
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| Q |
116 |
ccagtgaagtaattttctcttaaaatcaatgtggttatatttctccaacttctcaaacttgatggaagtgttccatttaggaaattgaatcccacatcaa |
215 |
Q |
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|| ||||| | ||| ||||| || | ||||||| |||| |||||||||| ||||||||||||| | || |||||||||||||||||||||||| |||| |
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| T |
36865435 |
cctgtgaaatgattatctctcaagaccaatgtgcttatgcctctccaacttatcaaacttgatgggaatgatccatttaggaaattgaatcccacgtcaa |
36865336 |
T |
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| Q |
216 |
actgatccattttagaacaattt |
238 |
Q |
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| ||||||| |||| ||||||| |
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| T |
36865335 |
aacgatccatgttagtacaattt |
36865313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 45561235 - 45561166
Alignment:
| Q |
169 |
caaacttgatggaagtgttccatttaggaaattgaatcccacatcaaactgatccattttagaacaattt |
238 |
Q |
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|||||||||||| | || ||||||| ||| || |||||||||||||||| |||||||||| ||||||| |
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| T |
45561235 |
caaacttgatggcaatgaaccatttaagaagttaaatcccacatcaaacttgtccattttagtacaattt |
45561166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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