View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_low_38 (Length: 237)
Name: NF3252_low_38
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 1876217 - 1876031
Alignment:
| Q |
1 |
caatatttttagaccgtgtgaaatttgcttgctttctgcaaaattcaatctcaatccaatgaccaccaatattctgaccgcgtgaaatttgttacttcaa |
100 |
Q |
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| T |
1876217 |
caatattttcagaccgtgtgaaatttgcttgctttctgcaaagttcggtctcaatccaatgaccaccaatattctgatcgcatgaaatttgttacttcaa |
1876118 |
T |
|
| Q |
101 |
ataatccaaatccattttatggaactatattatattatggtttatcttttgtcgaattccttagcttaagaagcaaatacacaatcattcca |
192 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1876117 |
ataatccaaatccattttatggacc-----tatattatggtttatcttttgtcaaattccttagcttaagaagcaaatacacaatcattcca |
1876031 |
T |
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