View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_low_4 (Length: 491)
Name: NF3252_low_4
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 194 - 483
Target Start/End: Original strand, 3046139 - 3046414
Alignment:
| Q |
194 |
ttccgccagttattattatgattattgtacttcacgtatgttgatgctccatccaaccccattacatagaagacattacatcaatcatacctagtggaaa |
293 |
Q |
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| T |
3046139 |
ttccgccagttattattatgattattgtacttgacatatgctgatactcca----accccattacatagaagacattacatcaatcataactagtggaaa |
3046234 |
T |
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| Q |
294 |
gacacacgtctttctccgcttccataaattaactacaatcattgagcttccaaatatggaagacttccttcatccaaccaaatcgagattcattcttccc |
393 |
Q |
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| T |
3046235 |
gacgcacgtctttcttcgcttccataaattaactacaatcattgagcttccaaatatggaagtcttccttcatccaaccaaatcgagattcattcttccc |
3046334 |
T |
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| Q |
394 |
atcatatattccaagaacatctaactaacggaatgatatcctttctcaaaatccaccttcactaacaaacacccttttctacttcttttc |
483 |
Q |
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| T |
3046335 |
atcatatattcc----------aactaacggaatcatatcctttctcaaaatccaccttcactaacaaacacccttttctacttcttttc |
3046414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 3045683 - 3045854
Alignment:
| Q |
17 |
acttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgataatcaacaatgaggc |
116 |
Q |
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| T |
3045683 |
acttaaagggcataaatatttaattttaggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgataatcaacaacgaggc |
3045782 |
T |
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| Q |
117 |
cacgagactggttagttgttgttgctgttattattat------tactatgcaacaagagattttatcaacac |
182 |
Q |
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| T |
3045783 |
cacgagactggttagttgttgttattattattattattattactactatgcaacaagagattttatgaacac |
3045854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 34604076 - 34604149
Alignment:
| Q |
17 |
acttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattc |
90 |
Q |
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| T |
34604076 |
acttaaagggcataatcgtttaatttttggattcaacgcctacatgaaggatcgtcgtatcacacttccaattc |
34604149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 34725353 - 34725426
Alignment:
| Q |
17 |
acttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattc |
90 |
Q |
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| T |
34725353 |
acttaaagggcataatcgtttaatttttggattcaacgcctacatgaaggatcgtcgtatcacacttccaattc |
34725426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 33468726 - 33468633
Alignment:
| Q |
17 |
acttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgataatcaacaa |
110 |
Q |
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| T |
33468726 |
acttaaaaggcataatcatttgattttgggattcaacaactacatgaagcattatcgtatcacactttcaattccaatcaatgatgatgaacaa |
33468633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 30865278 - 30865192
Alignment:
| Q |
21 |
aaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgataatcaa |
107 |
Q |
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| T |
30865278 |
aaaggccagaaacatttaatcttgggattcaacacctacatgaagcattatcgaatcagactgccaatcccagtcgatgatcatcaa |
30865192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 38868860 - 38868786
Alignment:
| Q |
18 |
cttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattcca |
92 |
Q |
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| T |
38868860 |
cttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttccaattcca |
38868786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 39046744 - 39046822
Alignment:
| Q |
23 |
agggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgat |
101 |
Q |
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| T |
39046744 |
agggcataatcatttaatattaggattcaactcctacatgaagcatcatgcaatcagacttccaattccaatcgatgat |
39046822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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