View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_low_40 (Length: 227)
Name: NF3252_low_40
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 4936102 - 4936190
Alignment:
| Q |
101 |
aaacctgatgtcgctttaagaatgctttgtttgtttgtttataatggtccttttaaaggagccaaagttaagagagagaaatttacgag |
189 |
Q |
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| T |
4936102 |
aaacctgatgtcgctttaagaatgctttgtttgtttgtttataatggtccttttaaaggagccaaagttaagagagagaaatttacgag |
4936190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 5021191 - 5021279
Alignment:
| Q |
101 |
aaacctgatgtcgctttaagaatgctttgtttgtttgtttataatggtccttttaaaggagccaaagttaagagagagaaatttacgag |
189 |
Q |
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| T |
5021191 |
aaacctgatgtcgctttaagaatgctttgtttgtttgtttataatggtccttttaaaggagccaaagttaagagagagaaatttacgag |
5021279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 4937124 - 4937178
Alignment:
| Q |
126 |
tttgtttgtttgtttataatggtccttttaaaggagccaaagttaagagagagaaa |
181 |
Q |
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| T |
4937124 |
tttgtttgtttgtttataatggtccttttaaagtagccaaagtt-agagagagaaa |
4937178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 5022212 - 5022266
Alignment:
| Q |
126 |
tttgtttgtttgtttataatggtccttttaaaggagccaaagttaagagagagaaa |
181 |
Q |
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| T |
5022212 |
tttgtttgtttgtttataatggtccttttaaagtagccaaagtt-agagagagaaa |
5022266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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