View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_low_5 (Length: 462)
Name: NF3252_low_5
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 10 - 445
Target Start/End: Complemental strand, 54116927 - 54116492
Alignment:
| Q |
10 |
acatcatcagcccttcaaattaacactataattttttacatacaattaaaataagctatcaaggaaaaagtattatataaattattaaaaatacatgaat |
109 |
Q |
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| T |
54116927 |
acatcatcagcccttcaaattaacactataaatttttacatacaattaaaataagctatcaaggaaaaagtattatataaattattaaaaatacatgaat |
54116828 |
T |
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| Q |
110 |
acaagataaaattattaccgctagtttgaaatgaaagaaaaaagttaatggatctatagttagtcacatcacaaacaagttattcatagctacaatttgt |
209 |
Q |
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| T |
54116827 |
acaagataaaattattactactagtttgaaatgaaagaaaaaagttaatggatctgtagttagtcacatcacaaacaagtcattcatagctacaatttgt |
54116728 |
T |
|
| Q |
210 |
tattgctttcaatacccttcttcaacttacattttgtataggcttagttgtttgaattttcaatagggtggttctgtttttctgaaatagagtacaatga |
309 |
Q |
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| T |
54116727 |
tattgctttcaataccattcttcaacttacattttgtataggcttagttgtttgaattttcaatagggtggttctgtttttctgaaatagagtacaatga |
54116628 |
T |
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| Q |
310 |
agtgatcctaccatgttatacacttgcctaacaataatgatatcatgattggtatgtattagcaaaatggtttgggttgtatgtcgtcattcacaatgat |
409 |
Q |
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| T |
54116627 |
agtgatcctaccatgttatacacttgcctaacaataatgatatcatgattggtatgtattagcaaaatggttggggttgtatgtcgtcattcacaatgat |
54116528 |
T |
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| Q |
410 |
tgaagccaaaatttgtatgatttttctggatactct |
445 |
Q |
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| T |
54116527 |
tgaagccaaaatttgtaggatttttctggatactct |
54116492 |
T |
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