View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3252_low_7 (Length: 436)
Name: NF3252_low_7
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3252_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 108 - 418
Target Start/End: Original strand, 32482156 - 32482466
Alignment:
| Q |
108 |
aaaaaacataagttaggagtattacacaaaaacaaacgttgaaggaagctatagctgctagctgggaagtgatattgaaagcgtgattaacgctgcttgc |
207 |
Q |
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| T |
32482156 |
aaaaaacataagttaggagtattacacaaaaacaaacgttgaaggaagctatagctgctagctgggaagtgatattgaaagcgtgattaacgctgcttgc |
32482255 |
T |
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| Q |
208 |
tgccacgacactgtttagccgtctgtttctgttttctgtccttctttttcttattaacttcaattcaattcaattactatactcttttcccaaccataac |
307 |
Q |
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| T |
32482256 |
tgccacgacactgtttagccgtctgtttctgttttctgtccttctttttcttattaacttcaattcaattcaattactatactcttttcccaaccataac |
32482355 |
T |
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| Q |
308 |
aaggagacatatacttatgttttcattttctctgtgttttgttttgtgtaattttctggagacgcacacaaaacacggtatcccataaaccatttttcac |
407 |
Q |
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| T |
32482356 |
aaggagacatatacttatgttttcattttctctgtgttttgttttgtgtaattttctggagacgcacacaaaacacggtatcccataaaccatttttcac |
32482455 |
T |
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| Q |
408 |
aaatcccaatt |
418 |
Q |
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| T |
32482456 |
aaatcccaatt |
32482466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32482048 - 32482111
Alignment:
| Q |
1 |
aggggcatggcggcgtttgcagtgcagagatagctgtaaaaagactgtggtactgttccttcct |
64 |
Q |
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| T |
32482048 |
aggggcatggcggcgtttgcagtgcagagatagctgtaaaaagactgtggtactgttccttcct |
32482111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 379
Target Start/End: Original strand, 11308502 - 11308535
Alignment:
| Q |
346 |
ttgttttgtgtaattttctggagacgcacacaaa |
379 |
Q |
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| T |
11308502 |
ttgttttgtggaattttctggagacgcacacaaa |
11308535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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