View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3252_low_8 (Length: 428)

Name: NF3252_low_8
Description: NF3252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3252_low_8
NF3252_low_8
[»] chr5 (16 HSPs)
chr5 (1-408)||(40549190-40549590)
chr5 (87-144)||(40545116-40545173)
chr5 (93-147)||(42637359-42637413)
chr5 (98-147)||(31789532-31789581)
chr5 (98-147)||(32032881-32032930)
chr5 (88-153)||(42629633-42629698)
chr5 (88-145)||(37512897-37512954)
chr5 (96-144)||(42564983-42565031)
chr5 (96-147)||(32642965-32643016)
chr5 (96-155)||(42783251-42783310)
chr5 (104-155)||(43322816-43322867)
chr5 (98-147)||(9764510-9764559)
chr5 (93-153)||(15807722-15807782)
chr5 (93-137)||(24655518-24655562)
chr5 (93-137)||(29416819-29416863)
chr5 (93-137)||(37408373-37408417)
[»] chr3 (3 HSPs)
chr3 (93-164)||(5162457-5162528)
chr3 (101-158)||(2703734-2703791)
chr3 (79-147)||(44550492-44550560)
[»] chr2 (6 HSPs)
chr2 (93-155)||(44937798-44937860)
chr2 (93-155)||(44912522-44912584)
chr2 (93-137)||(7488773-7488817)
chr2 (96-144)||(44141455-44141503)
chr2 (215-285)||(16921116-16921186)
chr2 (93-155)||(44918487-44918549)
[»] chr6 (6 HSPs)
chr6 (93-147)||(29012845-29012899)
chr6 (93-148)||(29145309-29145364)
chr6 (99-154)||(32960737-32960792)
chr6 (184-281)||(29124255-29124352)
chr6 (40-147)||(32744871-32744978)
chr6 (75-147)||(29124143-29124215)
[»] chr4 (7 HSPs)
chr4 (93-155)||(20426625-20426687)
chr4 (40-147)||(9581993-9582100)
chr4 (40-147)||(9587688-9587795)
chr4 (93-144)||(54295094-54295145)
chr4 (97-147)||(48741994-48742044)
chr4 (94-154)||(20453093-20453153)
chr4 (105-153)||(37875662-37875710)
[»] chr1 (6 HSPs)
chr1 (93-147)||(368808-368862)
chr1 (93-147)||(361890-361944)
chr1 (98-137)||(19219205-19219244)
chr1 (101-144)||(51874721-51874764)
chr1 (98-155)||(19221522-19221579)
chr1 (94-155)||(51870012-51870073)
[»] chr8 (9 HSPs)
chr8 (104-156)||(12705788-12705840)
chr8 (96-155)||(15338150-15338209)
chr8 (96-155)||(15427215-15427274)
chr8 (96-155)||(15518519-15518578)
chr8 (94-156)||(12711783-12711845)
chr8 (93-155)||(26607070-26607132)
chr8 (105-153)||(18096716-18096764)
chr8 (93-155)||(12652273-12652335)
chr8 (96-137)||(13472944-13472985)
[»] scaffold0134 (1 HSPs)
scaffold0134 (93-147)||(16236-16290)
[»] scaffold0129 (1 HSPs)
scaffold0129 (93-147)||(10488-10542)
[»] chr7 (4 HSPs)
chr7 (93-153)||(45866865-45866925)
chr7 (93-145)||(5438313-5438365)
chr7 (93-145)||(5447289-5447341)
chr7 (93-145)||(42446350-42446402)
[»] scaffold0054 (1 HSPs)
scaffold0054 (93-148)||(39828-39883)


Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 40549190 - 40549590
Alignment:
Q  1 cttaccttcagaccataaagtgcactcgacacaatcaatggtgttaaatggcttcgttgctttgatctctttaaatgaaaagacgaaaactattcacata 100  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40549190 cttaccttcagaccataaattgcactcaacacaatcaatggtgttaaatggcttcgttgctttgatctctttacatgaaaagacgaaaactattcacata 40549289  T
Q  101 tcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttgaacaaccttatgttggatttcctaccgaagtgggtatgaaggggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  40549290 tcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttgaacaaccatatgttggatttcctaccggagtgggtatgaaggggg 40549389  T
Q  201 aaatattctttgagaaagaagataatgaaatagtttggtttgatttaactacaaatatgattaaggagcttggtcttaaaggaaaaagaagtagttagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       || ||| |||| ||||    
T  40549390 aaatattctttgagaaagaagataatgaaatagtttggtttgatttaactacaaacatgattaaggagcttggtctt-------aatgaaatagtcagaa 40549482  T
Q  301 ccagaattaccaagaatttgaaaggcactttctaattgcttaggccattcggtttcctttttattttcctgcattttctgcattgtagtttcagaaccag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  40549483 ccagaattaccaagaatttgaaaggcactttctaattgcttaggccattcggtttcctttttattttccagcattttcttcattgtagtttcagaaccag 40549582  T
Q  401 aatatgtt 408  Q
    ||||||||    
T  40549583 aatatgtt 40549590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 40545116 - 40545173
Alignment:
Q  87 aaactattcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaact 144  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40545116 aaacttttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaact 40545173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 42637413 - 42637359
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  42637413 ttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactctt 42637359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 31789532 - 31789581
Alignment:
Q  98 atatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31789532 atatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactctt 31789581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 32032881 - 32032930
Alignment:
Q  98 atatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  32032881 atatcaatttggggtgaagttggtgtgaaggaatcatggatcaaactctt 32032930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 42629698 - 42629633
Alignment:
Q  88 aactattcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgt 153  Q
    |||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||    
T  42629698 aacttttcatatatcaattttgggtgaagtcggagtgaaggagtcatggatcaaactttttattgt 42629633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 37512897 - 37512954
Alignment:
Q  88 aactattcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactc 145  Q
    |||| |||||||||||||||||||||| || |||| |||| |||||||||||||||||    
T  37512897 aacttttcacatatcaattttgggtgaggttggtgggaagaaatcatggatcaaactc 37512954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 42565031 - 42564983
Alignment:
Q  96 acatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaact 144  Q
    |||||||| ||||||||||| | ||||| ||||||||||||||||||||    
T  42565031 acatatcagttttgggtgaactaggtgtcaaggaatcatggatcaaact 42564983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 32642965 - 32643016
Alignment:
Q  96 acatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    |||||||||||||| ||||| |   |||||||||||||||||||||||||||    
T  32642965 acatatcaattttgagtgaattaactgtgaaggaatcatggatcaaactctt 32643016  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 42783251 - 42783310
Alignment:
Q  96 acatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    |||||||||||||||||||| |  |||| || ||||||||||| ||||||||| ||||||    
T  42783251 acatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttg 42783310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 43322816 - 43322867
Alignment:
Q  104 attttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    |||||||||||| ||||||| ||| ||| |||||||||||||||| ||||||    
T  43322816 attttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttg 43322867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 9764510 - 9764559
Alignment:
Q  98 atatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    |||||||||||||||||| | ||||| |||||||||||||| | ||||||    
T  9764510 atatcaattttgggtgaacttggtgtcaaggaatcatggattagactctt 9764559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 15807782 - 15807722
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgt 153  Q
    ||||||||||||||||||||||||| ||  | || || ||||||| |||||||||| ||||    
T  15807782 ttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 15807722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 24655518 - 24655562
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatgga 137  Q
    ||||||| ||||||||||| ||| ||||||| |||||||||||||    
T  24655518 ttcacatttcaattttgggagaactcggtgtaaaggaatcatgga 24655562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 29416863 - 29416819
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatgga 137  Q
    ||||||| ||||||||||| ||| ||||||| |||||||||||||    
T  29416863 ttcacatttcaattttgggagaactcggtgtaaaggaatcatgga 29416819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 37408417 - 37408373
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatgga 137  Q
    ||||||| ||||||||||||||  ||||||| |||||||||||||    
T  37408417 ttcacatttcaattttgggtgagctcggtgtaaaggaatcatgga 37408373  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 5162457 - 5162528
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttgaacaacctt 164  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||| ||||||    
T  5162457 ttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactcttcactgttgaaaaacctt 5162528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 2703734 - 2703791
Alignment:
Q  101 tcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttgaac 158  Q
    ||||||||||||||| | ||||| |||||||||||||| |||||||||| ||||||||    
T  2703734 tcaattttgggtgaacttggtgtcaaggaatcatggattaaactctttgatgttgaac 2703791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 44550560 - 44550492
Alignment:
Q  79 aaagacgaaaactattcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    ||||||||  ||| |||| ||||||||||| |||||| ||||||||||| ||| |||||  ||||||||    
T  44550560 aaagacgactacttttcaaatatcaattttaggtgaattcggtgtgaagaaattatggactaaactctt 44550492  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 44937860 - 44937798
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||  ||||||||||||||||    
T  44937860 ttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgttg 44937798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 44912584 - 44912522
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    |||||||||| |||||||||||| | |||||||||||||| || |  ||||||||||||||||    
T  44912584 ttcacatatcgattttgggtgaacttggtgtgaaggaatcgtgaactaaactctttgttgttg 44912522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 7488817 - 7488773
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatgga 137  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||    
T  7488817 ttcacatatcaattttgggtgaaattggtgtgaaagaatcatgga 7488773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 44141503 - 44141455
Alignment:
Q  96 acatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaact 144  Q
    ||||||||||| | |||||| ||||||||||||||||||||| ||||||    
T  44141503 acatatcaattctaggtgaactcggtgtgaaggaatcatggaccaaact 44141455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 16921116 - 16921186
Alignment:
Q  215 aaagaagataatgaaatagtttggtttgatttaactacaaatatgattaaggagcttggtcttaaaggaaa 285  Q
    ||||| |||||||||||||| ||||||||||| | |||  | |||||| | ||||||||| ||||||||||    
T  16921116 aaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaaggaaa 16921186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 44918549 - 44918487
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    |||||||||||||||| |||||| | |||| ||| ||||| ||||  ||||||||||||||||    
T  44918549 ttcacatatcaattttaggtgaacttggtgggaaagaatcgtggactaaactctttgttgttg 44918487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 29012845 - 29012899
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||| |||||||||    
T  29012845 ttcacatatcaattttgggggatttcggtgtgaaggaatcatggaccaaactctt 29012899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 29145309 - 29145364
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactcttt 148  Q
    ||||||||||||||||||||| | | ||| ||||||||||||||| ||||||||||    
T  29145309 ttcacatatcaattttgggtggattaggtatgaaggaatcatggaccaaactcttt 29145364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 32960792 - 32960737
Alignment:
Q  99 tatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgtt 154  Q
    |||||||||||| |||| ||||| |||||||||| ||||||||||||||| |||||    
T  32960792 tatcaattttggatgaaatcggtatgaaggaatcttggatcaaactctttattgtt 32960737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 29124255 - 29124352
Alignment:
Q  184 agtgggtatgaagggggaaatattctttgagaaagaagataatgaaatagtttggtttgatttaactacaaatatgattaaggagcttggtcttaaag 281  Q
    |||||||||||||||||||||||||||    | | ||||||| ||| ||| |||||||||||| | |||  | |||||| ||||||||||| ||||||    
T  29124255 agtgggtatgaagggggaaatattcttcattagaaaagataaagaactagcttggtttgatttgagtacccaaatgattgaggagcttggttttaaag 29124352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 32744978 - 32744871
Alignment:
Q  40 ggtgttaaatggcttcgttgctttgatctctttaaatgaaaagacgaaaactattcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatc 139  Q
    |||||||||||| | | |||| |||||||| |   ||||||||||||  ||| |||||||||||||| |||||||  | ||| |||| |||||||||| |    
T  32744978 ggtgttaaatgggtccattgcattgatctcatattatgaaaagacgactacttttcacatatcaattatgggtgagattggtatgaaagaatcatggacc 32744879  T
Q  140 aaactctt 147  Q
    || |||||    
T  32744878 aatctctt 32744871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 29124143 - 29124215
Alignment:
Q  75 atgaaaagacgaaaactattcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    ||||||||| ||  ||| |||| ||||||||| |||||||  ||||| ||||||||||||||| ||| |||||    
T  29124143 atgaaaagaagactacttttcagatatcaattctgggtgagatcggtatgaaggaatcatggaccaagctctt 29124215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 20426625 - 20426687
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    ||||||||||||||||  ||||| |||| ||||||||||| |||| |||||||||||||||||    
T  20426625 ttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttg 20426687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 9582100 - 9581993
Alignment:
Q  40 ggtgttaaatggcttcgttgctttgatctctttaaatgaaaagacgaaaactattcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatc 139  Q
    |||||||||||| | | |||| |||||||| |   ||||| |||||| || | |||||||||||||||||||||||  |||| | ||||| ||||||| |    
T  9582100 ggtgttaaatgggtccattgcattgatctcatatcatgaagagacgacaaattttcacatatcaattttgggtgaatacggtataaaggagtcatggacc 9582001  T
Q  140 aaactctt 147  Q
    ||||||||    
T  9582000 aaactctt 9581993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 9587795 - 9587688
Alignment:
Q  40 ggtgttaaatggcttcgttgctttgatctctttaaatgaaaagacgaaaactattcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatc 139  Q
    |||||||||||| | | |||| |||||||| |   ||||| |||||| || | |||||||||||||||||||||||  |||| | ||||| ||||||| |    
T  9587795 ggtgttaaatgggtccattgcattgatctcatatcatgaagagacgacaaattttcacatatcaattttgggtgaatacggtataaaggagtcatggacc 9587696  T
Q  140 aaactctt 147  Q
    ||||||||    
T  9587695 aaactctt 9587688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 54295145 - 54295094
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaact 144  Q
    ||||||||||||||||||||||| |||||||||  ||||| |||| ||||||    
T  54295145 ttcacatatcaattttgggtgaattcggtgtgatagaatcgtggaccaaact 54295094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 48742044 - 48741994
Alignment:
Q  97 catatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    |||||||||||| |||||| |||||||||||||||| ||||  ||||||||    
T  48742044 catatcaattttaggtgaactcggtgtgaaggaatcttggactaaactctt 48741994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 20453093 - 20453153
Alignment:
Q  94 tcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgtt 154  Q
    ||||||||||||||| |||||  |||| |||||||||||||| |  ||| |||||||||||    
T  20453093 tcacatatcaattttaggtgagttcggcgtgaaggaatcatgtactaaattctttgttgtt 20453153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 37875662 - 37875710
Alignment:
Q  105 ttttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgt 153  Q
    ||||||||||||| ||| | ||||||||||||| ||| |||||||||||    
T  37875662 ttttgggtgaagtgggtattaaggaatcatggaccaatctctttgttgt 37875710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 368808 - 368862
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    |||||||||||||| | |||||| | |||||||||||||||||||||||||||||    
T  368808 ttcacatatcaattcttggtgaaattggtgtgaaggaatcatggatcaaactctt 368862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 361890 - 361944
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    |||||||||||||| | |||||| |||||||||||||||||||||| || |||||    
T  361890 ttcacatatcaattcttggtgaaatcggtgtgaaggaatcatggataaagctctt 361944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 19219244 - 19219205
Alignment:
Q  98 atatcaattttgggtgaagtcggtgtgaaggaatcatgga 137  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  19219244 atatcaattttgggtgaactcggtgtcaaggaatcatgga 19219205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 51874764 - 51874721
Alignment:
Q  101 tcaattttgggtgaagtcggtgtgaaggaatcatggatcaaact 144  Q
    ||||||||||||||| |  |||||||||||||||||||||||||    
T  51874764 tcaattttgggtgaactaagtgtgaaggaatcatggatcaaact 51874721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 19221522 - 19221579
Alignment:
Q  98 atatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    |||||||||||||||||  ||| |||||||||||||||||  || ||||||| |||||    
T  19221522 atatcaattttgggtgagctcgatgtgaaggaatcatggactaagctctttgatgttg 19221579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 51870012 - 51870073
Alignment:
Q  94 tcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    ||||||||||||||| |||||| |||| |||||||||| || ||  ||||||||| ||||||    
T  51870012 tcacatatcaattttaggtgaactcggcgtgaaggaattatagactaaactctttattgttg 51870073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 12705788 - 12705840
Alignment:
Q  104 attttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttga 156  Q
    |||||||||||||||||||| || ||||| ||||| |||||||||||||||||    
T  12705788 attttgggtgaagtcggtgttaaagaatcgtggattaaactctttgttgttga 12705840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 15338209 - 15338150
Alignment:
Q  96 acatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    |||||||||||||||||||| |||| ||||| ||||||||||  ||||| ||||||||||    
T  15338209 acatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttg 15338150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 15427274 - 15427215
Alignment:
Q  96 acatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    |||||||||||||||||||| |||| ||||| ||||||||||  ||||| ||||||||||    
T  15427274 acatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttg 15427215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 15518578 - 15518519
Alignment:
Q  96 acatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    |||||||||||||||||||| |||| ||||| ||||||||||  ||||| ||||||||||    
T  15518578 acatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttg 15518519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 12711845 - 12711783
Alignment:
Q  94 tcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttga 156  Q
    ||||||||  |||||||||||| ||||||| || ||||| ||||| |||||||||||||||||    
T  12711845 tcacatatggattttgggtgaactcggtgttaaagaatcgtggattaaactctttgttgttga 12711783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 26607070 - 26607132
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    |||| |||||| |||| || ||| |||||||||| ||||||||||| ||||||||||||||||    
T  26607070 ttcatatatcagttttaggcgaactcggtgtgaaagaatcatggattaaactctttgttgttg 26607132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 18096716 - 18096764
Alignment:
Q  105 ttttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgt 153  Q
    ||||||||||||| ||||| ||||||||||||| ||| |||||||||||    
T  18096716 ttttgggtgaagtgggtgtcaaggaatcatggaccaagctctttgttgt 18096764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 12652273 - 12652335
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 155  Q
    |||||||||| |||||||||||| | |||||  ||||||| ||||  ||||||||||||||||    
T  12652273 ttcacatatcgattttgggtgaaattggtgttgaggaatcgtggactaaactctttgttgttg 12652335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 13472985 - 13472944
Alignment:
Q  96 acatatcaattttgggtgaagtcggtgtgaaggaatcatgga 137  Q
    |||||||||||||||||||| ||||||| || ||||||||||    
T  13472985 acatatcaattttgggtgaaatcggtgtcaaagaatcatgga 13472944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 16290 - 16236
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    ||||||||||||||||||||||| | |||  |||||||||||||||||| |||||    
T  16290 ttcacatatcaattttgggtgaaattggtaagaaggaatcatggatcaatctctt 16236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 10488 - 10542
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 147  Q
    ||||||||||||||||||||||||| ||||||||||| || ||||  ||||||||    
T  10488 ttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 10542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 45866865 - 45866925
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgt 153  Q
    |||||||||||||||| |||||| | || |||||||| |||||||||||||| ||| ||||    
T  45866865 ttcacatatcaattttaggtgaaattggagtgaaggagtcatggatcaaactttttattgt 45866925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 5438365 - 5438313
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactc 145  Q
    |||| |||||| ||||||||||| | ||| |||||||||||||||| ||||||    
T  5438365 ttcatatatcagttttgggtgaacttggtatgaaggaatcatggataaaactc 5438313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 5447341 - 5447289
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactc 145  Q
    |||| |||||| ||||||||||| | ||| |||||||||||||||| ||||||    
T  5447341 ttcatatatcagttttgggtgaacttggtatgaaggaatcatggataaaactc 5447289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 42446350 - 42446402
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactc 145  Q
    ||||||||||||||||||||||| | | | | ||||||||||||| |||||||    
T  42446350 ttcacatatcaattttgggtgaacttgctatcaaggaatcatggaccaaactc 42446402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 39883 - 39828
Alignment:
Q  93 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactcttt 148  Q
    |||||||| |||||||||||||| ||||  | |||||||| |||||||||||||||    
T  39883 ttcacatagcaattttgggtgaactcggcattaaggaatcgtggatcaaactcttt 39828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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