View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_high_1 (Length: 820)
Name: NF3253_high_1
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 231 - 810
Target Start/End: Original strand, 37307125 - 37307701
Alignment:
| Q |
231 |
gcttcacaatggtgaaccctcctttattttgaaatgggaggtttcaagtttcccgaagcataaattaaaccaacaaaaccagtctctaacggctcagtgt |
330 |
Q |
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| T |
37307125 |
gcttcacaatggtgaaccctcctttattttgaaatgggaggtttcaagtttcccgaagcataaattaaaccaacaaaaccagtctctaacggctcagtgt |
37307224 |
T |
|
| Q |
331 |
aatttaatttagctacactacgccacctgtctactggtacatttcatttcatttttgcacaccccttcttgaattagtttttt-acttaattagtgtttg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
37307225 |
aatttaatttagctacactacgccacctgtctactggtacatttcatttcatttttgcacaccccttcttgaattaatttttttacttaattagtgtttg |
37307324 |
T |
|
| Q |
430 |
ataatttgtctaattaaaccaatatttatttatttgtttaatcagtggttgaaatggaacaatcttccaagccaaatgtaccttctatatctgaaatcaa |
529 |
Q |
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| T |
37307325 |
ataatttgtctaattaaaccaatatt----tatttgtttaatcagtggttgaaatggaacaatcttccaagccaaatgtaccttctatacctgaaatcaa |
37307420 |
T |
|
| Q |
530 |
aatgaaaccaaatccgaaaaagaagattccttcaccaaaggaattgatatcctattatgaatcacaagggatggattcacaagaagcctcattgaaggtg |
629 |
Q |
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| T |
37307421 |
aatgaaaccaaatccgaaaaagaagattccttcaccaaaggaattgatatcctattatgaatcacaagggatggattcacaagaagcctcattgaaggtg |
37307520 |
T |
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| Q |
630 |
atagaggatttacaaaaggctttgtttggagtaatttcatctggtaaaggtaaaaaggataggcttatgaatgaatcttctagaaagatggattcggtta |
729 |
Q |
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| T |
37307521 |
atagaggatttacaaaaggctttgtttggagtaatttcatctggtaaaggtaaaaaggataggcttatgaatgaatcttctagaaagatggattcggtta |
37307620 |
T |
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| Q |
730 |
accaaagacttgctatacttgacatgaagcttgatactaagcctggatttgttgagacgtttgcaattggggttgtctctg |
810 |
Q |
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| T |
37307621 |
accaaagacttgctatacttgacatgaagcttgatactaagcctggatttgttgagacgtttgcaattggggttgtttctg |
37307701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 37306904 - 37307054
Alignment:
| Q |
11 |
atcatcacttttgataggcgttgcgttcttcgttagtttttcatgccgaagtacgtgtcaacgaaagcgtatatcaatttcaacacagactttttcctta |
110 |
Q |
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| T |
37306904 |
atcatcgcttttgataggcgttgcgttcttcgttagtttttcatgccgaagtacgtgtcaacgaaagcgtatatcaatttcaacacagactttttcctta |
37307003 |
T |
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| Q |
111 |
attatttgttaattaaag-nnnnnnnncatctgcgtattatcaccatcgca |
160 |
Q |
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| T |
37307004 |
gttatttgttaattaaagaaaaaaaaacatctgcgtattatcaccatcgca |
37307054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 7842124 - 7842039
Alignment:
| Q |
36 |
ttcttcgttagtttttcatgccgaagtacgtgtcaacgaaagcgtatatcaatttcaacacagactttttccttaattatttgtta |
121 |
Q |
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| T |
7842124 |
ttctttgttagtttctcatgccgaagtacgtgtcaacgaaagcgtaattcaatttcaacacagacttgtttcttaattatttgtta |
7842039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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