View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_high_11 (Length: 404)
Name: NF3253_high_11
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 39 - 388
Target Start/End: Complemental strand, 8947170 - 8946821
Alignment:
| Q |
39 |
taagctacgtataaaaggtgaaaatgacaatgcttgtgtctgattgttaccatatttatcagggttttgaatcatatgcatgaatgggttgtaaatatca |
138 |
Q |
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| T |
8947170 |
taagctacgtataaaaggtgaaaatgacaatgcttgtctctgattgttaccatatttatcagggttttgaatcatatgcatgaatgggttgtaaatatca |
8947071 |
T |
|
| Q |
139 |
aggtagacaagcttagcctctagaaatttattttcaaaggcatccatttgagatactagtttggagttgaagactattgcagcttcgttttctaaacctg |
238 |
Q |
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| T |
8947070 |
aggtagacaagcttagcctctggaaatttattttcaaaggcatccatttgagatactagtttggagttgaagactattgcagcttcgttttctaaacctg |
8946971 |
T |
|
| Q |
239 |
aacagtatctatacattcctcctccaattgttctctgtgagggaacacaccctatatatggcatcccaattactccaattcttctagctcctaaaccata |
338 |
Q |
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| T |
8946970 |
aacagtgtctatacattcctcctccaattgttctctgtgagggaacacaccctatatatggcatgccaattactccaattcttctagctcctaaaccata |
8946871 |
T |
|
| Q |
339 |
aagttcctgcattattttaggtaataactaatattactggacaaagaaaa |
388 |
Q |
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| T |
8946870 |
aagttcctgcattattttaggtaataactaatattactggacaaagaaaa |
8946821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 128 - 347
Target Start/End: Complemental strand, 8939548 - 8939329
Alignment:
| Q |
128 |
tgtaaatatcaaggtagacaagcttagcctctagaaatttattttcaaaggcatccatttgagatactagtttggagttgaagactattgcagcttcgtt |
227 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||| |||| ||| |
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| T |
8939548 |
tgtaaatatcaaggtagacaagcttagcttctggaaatttattttcaaaggcatccattttagatactaatttggagttgaagagtcttgctgcttggtt |
8939449 |
T |
|
| Q |
228 |
ttctaaacctgaacagtatctatacattcctcctccaattgttctctgtgagggaacacaccctatatatggcatcccaattactccaattcttctagct |
327 |
Q |
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||| ||| ||||||| ||| | || |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||| |
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| T |
8939448 |
ttcaaaatctgaacatcctctttcaatgcctcctccaattgttctctgtgagggcacacaccctatatttggcataccaattactccaatccttctagct |
8939349 |
T |
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| Q |
328 |
cctaaaccataaagttcctg |
347 |
Q |
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||||||||||| |||||||| |
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| T |
8939348 |
cctaaaccatatagttcctg |
8939329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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