View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_high_16 (Length: 345)
Name: NF3253_high_16
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 22841736 - 22841968
Alignment:
| Q |
11 |
cataggccatttcaagtcagcctgttccatcggtcatatgtgctggcaagttgcccggagatggaggtaaatcaggaggcaatttactcgggattgacag |
110 |
Q |
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| T |
22841736 |
cataggccatttcaagtcagcctgttccgtcggtcatatgtgctggcaagttgcccggagatggaggtaaatcaggaggcaatttactcgggattgacag |
22841835 |
T |
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| Q |
111 |
ctataaaatacagtttttgacatatttgttgaatgttgagcaatctttctactctaaaagagagaatttttaaggaatttagaggtttagagtaacctta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22841836 |
ctataaaatacagtttttgacatatttgttgaatgttgagcaatctttctactctaaaagagagaatttttaaggaatttagaggtttagagtaacctta |
22841935 |
T |
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| Q |
211 |
ataacataaatttgttctccaaaaacattactg |
243 |
Q |
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| T |
22841936 |
ataacataaatttgttctccaaaaacattactg |
22841968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 22877279 - 22877467
Alignment:
| Q |
15 |
ggccatttcaagtcagcctgttccatcggtcatatgtgctggcaagttgcccggagatggaggtaaatcaggaggcaatttactcgggattgacagctat |
114 |
Q |
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| T |
22877279 |
ggccatttcaagtcagcctgttccatcggtcatatgtgctggcaagttgcggggaattggaggtaaatcacgaggcaatttacttgggattgacagctat |
22877378 |
T |
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| Q |
115 |
aaaatacagtttttgacatatttgttgaatgttgagcaatctttctactctaaaagagagaatttttaaggaatttagaggtttagagtaacctta |
210 |
Q |
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| T |
22877379 |
aaaatacagtttttgacatatt-------tgttgagcaatctttccactctaaaggagagaatttttaaggaatttagaggtttagagtaacctta |
22877467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 22895037 - 22895228
Alignment:
| Q |
13 |
taggccatttcaagtcagcctgttccatcggtcatatgtgctggcaagttgcccggagatggaggtaaatcaggaggcaatttactcgggattgacagct |
112 |
Q |
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||||||| || ||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| || |
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| T |
22895037 |
taggccaattaaagtcagcctgtttcattggtcatatgtgctggcaagttgcagggagatggaggtaaatcacgaggcaatttactcaggattgacaact |
22895136 |
T |
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| Q |
113 |
ataaaatacagtttttgacatatttgttgaatgttgagcaatctttctactctaaaagagagaatttttaaggaatttagaggtttagagtaaccttaa |
211 |
Q |
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| T |
22895137 |
ataaaattcagtttttgacatatt-------tgtcgagcaatctttctactctaaatcagagaatttttaaggaatttagaggttcagagtaaccttaa |
22895228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 22870841 - 22870908
Alignment:
| Q |
144 |
tgttgagcaatctttctactctaaaagagagaatttttaaggaatttagaggtttagagtaaccttaa |
211 |
Q |
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| T |
22870841 |
tgttgagcaatctttctattctaaaggagagaatttttaaggaatttagaggtttagagtaaccttaa |
22870908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 22811146 - 22811081
Alignment:
| Q |
146 |
ttgagcaatctttctactctaaaagagagaatttttaaggaatttagaggtttagagtaaccttaa |
211 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22811146 |
ttgatcaatctttctactctaaaggagagaatttttaaggaatttagaggtttagagtaaccttaa |
22811081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 22886820 - 22886914
Alignment:
| Q |
33 |
tgttccatcggtcatatgtgctggcaagttgcccggagatggaggtaaatcaggaggcaatttactcgggattgacagctataaaatacagtttt |
127 |
Q |
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|||||||||||||| ||||| |||||| |||| ||||||||||| |||||| || |||||||||| ||||||||||||||||||||| |||| |
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| T |
22886820 |
tgttccatcggtcacatgtgttggcaaattgcagggagatggaggcaaatcaccgggtaatttactcgtgattgacagctataaaatacaatttt |
22886914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 22877476 - 22877512
Alignment:
| Q |
207 |
cttaataacataaatttgttctccaaaaacattactg |
243 |
Q |
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| T |
22877476 |
cttaataacataactttgttctccaaaaactttactg |
22877512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 22895236 - 22895272
Alignment:
| Q |
207 |
cttaataacataaatttgttctccaaaaacattactg |
243 |
Q |
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| T |
22895236 |
cttaataacataactttgttctccaaaaactttactg |
22895272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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