View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_high_2 (Length: 598)
Name: NF3253_high_2
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 42 - 584
Target Start/End: Complemental strand, 170801 - 170259
Alignment:
| Q |
42 |
gatcaaaattaaagaacagaataacaatttagtgctttgattggtaacatatcaagcattgaaagaggtattgtccgagcaaaaaatatgatccgtccag |
141 |
Q |
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| T |
170801 |
gatcaaaattaaagaacaaaataacaatttagtgctttggttggtaacatatcaagcattgaaagaggtattgtccgaacaaaaaatatgacccgtccag |
170702 |
T |
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| Q |
142 |
ttaagcaaatgtggtccaaaccgatgattttgacagtgaaggagatattatttgtgtttcacctgacaagtgtgcttatgtgtggattcttgactttggt |
241 |
Q |
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| T |
170701 |
ttaagcaaatgtggtccaaaccgatgattttgacagtgaaggagatattatttgtgtttcacctggcaagtgtgcttatgtgtggattcttgactttggt |
170602 |
T |
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| Q |
242 |
tgttcttaccacatgacgctgcaatggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgatttccgtaagtagtctacacg |
341 |
Q |
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| T |
170601 |
tgttcttaccacatgacgccgcactggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgatttccgtaagtagtctacacg |
170502 |
T |
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| Q |
342 |
aaaacgactacctcaaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgatatgagcaattcaaa |
441 |
Q |
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| T |
170501 |
aaaacgactatctcaaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgatatgagcaattcaaa |
170402 |
T |
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| Q |
442 |
ggttgtgaatacctcattgacaaatcacttaaaactctcatttgattagtgtccaaagacagatgaagaagttgggtatatgtcagaggttcgtcagtcc |
541 |
Q |
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| T |
170401 |
ggttgtgaatacctcattgacaaatcacttaaaactctcatttgattagtgtccaaagacagatgaagaagttgggtatatgtcagaggttcgtcagtcc |
170302 |
T |
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| Q |
542 |
atgcccttgtgtttgcccaaacatgtgttaggcgcaattattg |
584 |
Q |
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| T |
170301 |
atgcccttgtgtttgcccaaacatgtgttaggcccaattattg |
170259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 524
Target Start/End: Original strand, 9837658 - 9837827
Alignment:
| Q |
355 |
caaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgatatgagcaattcaaaggttgtgaatacc |
454 |
Q |
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| T |
9837658 |
caaggacaagagtgctagaaagttatggctttctaaaaaaagctatgttgaataggtgttagaaaaatttgacatgagcaatttgaagactgcgagtact |
9837757 |
T |
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| Q |
455 |
tcattgacaaatcacttaaaactctcatttgattagtgtccaaagacagatgaagaagttgggtatatgt |
524 |
Q |
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| T |
9837758 |
tcattgacaaatcattttaagttctcgtttgattagtgtttaaagacaaatgtagaagttgagtatatgt |
9837827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 533
Target Start/End: Complemental strand, 33559721 - 33559652
Alignment:
| Q |
464 |
aatcacttaaaactctcatttgattagtgtccaaagacagatgaagaagttgggtatatgtcagaggttc |
533 |
Q |
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| T |
33559721 |
aatcacttgaagctctcattggattagtgtccaaagatagatgcagaagttaagtatatgtcaaaggttc |
33559652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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