View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_high_21 (Length: 262)
Name: NF3253_high_21
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 49699195 - 49698965
Alignment:
| Q |
17 |
agatatctcctcgcaataggcccatggctatccacaagcaaatacgtagttttgtcatagtaagcaacaaagaaagttaaccaaatatcaaagaaaaata |
116 |
Q |
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| T |
49699195 |
agatatctcctcgcaataggcccatggctatccacaagcaaatacgtagttttgtcatagtaagcaacaaagaaagttaaccaaatatcaaagaaaaata |
49699096 |
T |
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| Q |
117 |
ttatattcacaacattatcagtaattgaaagaggtctcaaaggttcattcaagaacccgaattcaaatggtgacacccatgcagtgtagaacactaacac |
216 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49699095 |
ttatattcacaacattatcagtaatcgaaagaggtctcaaaggttcattcaagaacccgaattcaaatggtgacacccatgcagtgtagaacactaacac |
49698996 |
T |
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| Q |
217 |
caccaaaaacatctgccaccatctgcatgcc |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
49698995 |
caccaaaaacatctgccaccatctgcatgcc |
49698965 |
T |
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