View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3253_high_25 (Length: 249)
Name: NF3253_high_25
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_high_25 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 9824555 - 9824785
Alignment:
| Q |
19 |
tttatcacttatactgatgataagagtgcttagggtgaaatcgaaataacagaaaacattaggtgcaaaattttaaataggcaaaatgtcgagatggnnn |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9824555 |
tttatcacttatactgatgataagagagcttagggtgaaatcaaaataacagaaaactttaggtacaaaattttaaataggcaaaatgtcgagatggaaa |
9824654 |
T |
|
| Q |
119 |
nnnnntggtcttttcatatcaaaaatatcagaaactatggatttcaaattctatgaggaggtggaactcaaaaaactgtttggatcatcggttgatttgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9824655 |
aaaaatggtcttttcatatcaaaaatatcagaaactatggatttcaaattctacgaggaggtggaactcaaaaaactgtttggatcatcggttgatttgt |
9824754 |
T |
|
| Q |
219 |
taatacaggattgtgataatttattttattt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9824755 |
taatacaggattgtgataatttattttattt |
9824785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 88 - 249
Target Start/End: Complemental strand, 6262961 - 6262800
Alignment:
| Q |
88 |
attttaaataggcaaaatgtcgagatggnnnnnnnntggtcttttcatatcaaaaatatcagaaactatggatttcaaattctatgaggaggtggaactc |
187 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6262961 |
attttaaataggcaaaatgtcgagatggaaaaaaaatggtcttttcatatcaaaaatatcagaaactatggatttcaaattctacgaggaggtggaactc |
6262862 |
T |
|
| Q |
188 |
aaaaaactgtttggatcatcggttgatttgttaatacaggattgtgataatttattttattt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6262861 |
aaaaaactgtttggatcatcggttgatttgttaatacaggattgtgataatttattttattt |
6262800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 6272292 - 6272122
Alignment:
| Q |
19 |
tttatcacttatactgatgataagagtgcttagggtgaaatcgaaataacagaaaacattaggtgcaaaattttaaataggcaaaatgtcgagatggnnn |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6272292 |
tttatcacttatactgatgataagagagcttcgggtgaaatcgaaataacagaaaacattaggtgcaaaattttaaataggcaaaatgtcgagatggaaa |
6272193 |
T |
|
| Q |
119 |
nnnnntggtcttttcatatcaaaaatatcagaaactatggatttcaaattctatgaggaggtggaactcaa |
189 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6272192 |
aaaaatggtcatttcatatcaaaaatatcagaaactatggatttcaaattctacgaggaggtggaactcaa |
6272122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 249
Target Start/End: Original strand, 35680940 - 35681155
Alignment:
| Q |
41 |
agagtgcttagggtgaaatcgaaataacagaaaacattag-gtgcaaaattttaaataggcaaaatgtcgagatggnnnnnnnntggtcttttcatatca |
139 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||| || ||||||| |||||||||||||| | |
|
|
| T |
35680940 |
agagagcttagggtgaaatcgacataacagaaaacagaaaagtgcaaagttttaaataggcaaaaagttgagatggaaaaaaaatggtcttttcatataa |
35681039 |
T |
|
| Q |
140 |
aaaatatcagaaactatggatttcaaattctatgaggaggtggaactcaaaaaactgtttggatcatcggttgatttgtta------atacaggattgtg |
233 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| |||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
35681040 |
aaaatatcagagactatggatgtcaaattctacgaggagttggatctcaaaaaactgtttggatcattggttgatttgttaacacgtatacaggattgtg |
35681139 |
T |
|
| Q |
234 |
ataatttattttattt |
249 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35681140 |
ataatttattttattt |
35681155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University