View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_high_3 (Length: 558)
Name: NF3253_high_3
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_high_3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 296 - 558
Target Start/End: Original strand, 96465 - 96727
Alignment:
| Q |
296 |
ctacgttatttcagcgttcccatataatacagacaattacagttccatctgagtcactcttgaatgaacttcgaattgttgaggtcagttttttaacctg |
395 |
Q |
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| T |
96465 |
ctacgttatttcagcgttcccatataatacagacaattacagttccatctgagtcactcttgaatgaacttcgaattgttgaggtcagttttttaacctg |
96564 |
T |
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| Q |
396 |
cctttgatattcaaatttaatgtcattatcaaatttatactttctgtttttatccctgttcattgtccatgcgcaattgaattccttattcgaatcagtt |
495 |
Q |
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| T |
96565 |
cctttgatattcaaatttaatgtcattatcaaatttatactttctgtttttatccctgttcattgtccatgcgcaattgaattccttattcgaatcagtt |
96664 |
T |
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| Q |
496 |
tgtatttaagcttttagacaatattatgtttctgtaaattaggctattgcgcctgagacatcc |
558 |
Q |
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| T |
96665 |
tgtatttaagcttttagacaatattatgtttctgtaaattaggctattgtgcctgagacatcc |
96727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 96191 - 96407
Alignment:
| Q |
20 |
atgggttcttgtttactcgagaaaactgctttgaatgatcacgaagaagaaactggtaggtaccacttcttgttgcttcactaacctctttctaacttta |
119 |
Q |
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| T |
96191 |
atgggttcttgtttactcgagaaaactgctttgaatgatcacgaagaagaaactggtaggtaccacttcttgttgcttcactaacctctttctaacttta |
96290 |
T |
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| Q |
120 |
cttaactacttattctgtttctgcaggaaaggttcttcttatgcttggaaaaatccagttcaaacttcagaaacttattgataactatgtatgtaataat |
219 |
Q |
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| T |
96291 |
cttaactacttattctgtttctgcaggaaaggttcttcttatgcttggaaaaatccagttcaaacttcagaaacttattgataactatgtatgtaataat |
96390 |
T |
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| Q |
220 |
tccctattccatccata |
236 |
Q |
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| T |
96391 |
tccctattccatccata |
96407 |
T |
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