View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3253_high_30 (Length: 242)

Name: NF3253_high_30
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3253_high_30
NF3253_high_30
[»] chr5 (4 HSPs)
chr5 (167-242)||(22004480-22004555)
chr5 (189-242)||(19085423-19085476)
chr5 (189-242)||(22009574-22009627)
chr5 (189-242)||(26841010-26841063)
[»] chr8 (7 HSPs)
chr8 (167-241)||(5662589-5662663)
chr8 (189-241)||(24788079-24788131)
chr8 (206-242)||(27541621-27541657)
chr8 (189-242)||(5657793-5657846)
chr8 (189-242)||(14678067-14678120)
chr8 (189-242)||(31100918-31100971)
chr8 (206-242)||(23738679-23738715)
[»] chr3 (9 HSPs)
chr3 (167-217)||(53351958-53352008)
chr3 (169-241)||(47763940-47764012)
chr3 (167-242)||(17681789-17681864)
chr3 (189-241)||(24761944-24761996)
chr3 (189-241)||(24815938-24815990)
chr3 (189-241)||(31685100-31685152)
chr3 (206-241)||(2549960-2549995)
chr3 (167-242)||(12538659-12538734)
chr3 (167-242)||(53973309-53973385)
[»] scaffold0096 (1 HSPs)
scaffold0096 (167-242)||(27432-27507)
[»] chr6 (4 HSPs)
chr6 (167-242)||(3065720-3065795)
chr6 (189-242)||(33045477-33045530)
chr6 (189-242)||(30908415-30908468)
chr6 (206-242)||(4660238-4660274)
[»] scaffold0035 (1 HSPs)
scaffold0035 (189-242)||(35085-35138)
[»] chr7 (2 HSPs)
chr7 (189-242)||(1262110-1262163)
chr7 (206-242)||(26910044-26910080)
[»] scaffold0045 (1 HSPs)
scaffold0045 (206-242)||(11697-11733)
[»] chr2 (2 HSPs)
chr2 (167-223)||(24454556-24454612)
chr2 (198-242)||(10328947-10328991)
[»] scaffold0157 (1 HSPs)
scaffold0157 (189-242)||(13966-14019)
[»] chr4 (2 HSPs)
chr4 (189-242)||(12506458-12506511)
chr4 (206-242)||(24260242-24260278)
[»] scaffold0475 (1 HSPs)
scaffold0475 (206-242)||(7536-7572)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 22004480 - 22004555
Alignment:
Q  167 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||    
T  22004480 gagatccaacggaccaccttgattggcgcctaaactatctaggtttagggtttgcaaaatcattagcaatgttaac 22004555  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 19085423 - 19085476
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| |||||||||    
T  19085423 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaac 19085476  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 22009574 - 22009627
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| ||| |||| || ||||||||||||||||||| ||||||| |||||||||    
T  22009574 ttggagccaaaaccatttaggtttagggtttgcaaattcattagcaatgttaac 22009627  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 26841010 - 26841063
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| ||| |||| || ||||||||||||||||||| ||||||| |||||||||    
T  26841010 ttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaac 26841063  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 5662663 - 5662589
Alignment:
Q  167 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaa 241  Q
    |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||    
T  5662663 gagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaaagtcattagcaatattaa 5662589  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 24788079 - 24788131
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaa 241  Q
    |||||||| |||| |  ||||||||||||||||||||||||||| ||||||||    
T  24788079 ttggcgccaaaactaattaggtttagggtttgcaaagtcattagcaatgttaa 24788131  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 27541621 - 27541657
Alignment:
Q  206 taggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    ||||||||||||||||||||||||||| |||||||||    
T  27541621 taggtttagggtttgcaaagtcattagcaatgttaac 27541657  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 5657846 - 5657793
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| || ||||||    
T  5657846 ttggagccaaaactatttaggtttagggtttgcaaagtcattagcaacgttaac 5657793  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 14678067 - 14678120
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| ||| |||| || |||||||||||||| |||||||||||| |||||||||    
T  14678067 ttggagccaaaaccatttaggtttagggttttcaaagtcattagcaatgttaac 14678120  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 31100918 - 31100971
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| ||| |||| || |||||||||| |||||||||||||||| |||||||||    
T  31100918 ttggagccaaaaccatttaggtttaggatttgcaaagtcattagcaatgttaac 31100971  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 23738715 - 23738679
Alignment:
Q  206 taggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| |||||||||||||||||||||| |||||||||    
T  23738715 tagggttagggtttgcaaagtcattagcaatgttaac 23738679  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 53351958 - 53352008
Alignment:
Q  167 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggt 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53351958 gagatccaacggaccaccttgattggcgcctaaactatctaggtttagggt 53352008  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 47763940 - 47764012
Alignment:
Q  169 gatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaa 241  Q
    ||||||||||||| |||||||||||||||||| | ||||| |||||| |||||||||| ||||| ||||||||    
T  47763940 gatccaacggacctccttgattggcgcctaaaaattctagatttaggttttgcaaagttattagcaatgttaa 47764012  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 17681864 - 17681789
Alignment:
Q  167 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||||||||||| || ||||| |||| ||| |||| || ||||||||||||||||||| ||||||  |||||||||    
T  17681864 gagatccaacggccccccttgtttggagccaaaaccatttaggtttagggtttgcaaaatcattaacaatgttaac 17681789  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 24761944 - 24761996
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaa 241  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| ||||||||    
T  24761944 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaa 24761996  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 24815990 - 24815938
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaa 241  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| ||||||||    
T  24815990 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaa 24815938  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 31685152 - 31685100
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaa 241  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| ||||||||    
T  31685152 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaa 31685100  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 2549995 - 2549960
Alignment:
Q  206 taggtttagggtttgcaaagtcattagtaatgttaa 241  Q
    ||||||||||||||||||||||||||| ||||||||    
T  2549995 taggtttagggtttgcaaagtcattagcaatgttaa 2549960  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 12538659 - 12538734
Alignment:
Q  167 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||||||||||| |  ||||| |||| ||| |||| || ||||||||||||||||||| ||||||| || ||||||    
T  12538659 gagatccaacggcctcccttgtttggagccaaaaccatttaggtttagggtttgcaaaatcattagaaaggttaac 12538734  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 53973309 - 53973385
Alignment:
Q  167 gagatccaacggaccaccttgatt-ggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||||||||||| |  |||||||| || ||| |||| || ||||||||||||||||||  ||||||| |||||||||    
T  53973309 gagatccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaac 53973385  T

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Target: scaffold0096 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 27507 - 27432
Alignment:
Q  167 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||||||||||| |  ||||| |||| ||| |||| || ||||||||||||||||||| ||||||| |||||||||    
T  27507 gagatccaacggcctcccttgtttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaac 27432  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 3065795 - 3065720
Alignment:
Q  167 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||||||||||| |  ||||| |||| ||| |||| || |||||||||||||||||||||||||||  ||||||||    
T  3065795 gagatccaacggtctcccttgtttggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaac 3065720  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 33045477 - 33045530
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| |||||||||    
T  33045477 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaac 33045530  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 30908415 - 30908468
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| ||| |||| || ||| ||||||||||||||||||||||| |||||||||    
T  30908415 ttggagccaaaaccatttagatttagggtttgcaaagtcattagcaatgttaac 30908468  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 4660238 - 4660274
Alignment:
Q  206 taggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| |||||||||||||||||||||| |||||||||    
T  4660238 tagggttagggtttgcaaagtcattagcaatgttaac 4660274  T

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Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 35138 - 35085
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| |||||||||    
T  35138 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaac 35085  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 1262163 - 1262110
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| |||||||||    
T  1262163 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaac 1262110  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 26910044 - 26910080
Alignment:
Q  206 taggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  26910044 taggtttagggtttgcaaagttattagcaatgttaac 26910080  T

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Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 11697 - 11733
Alignment:
Q  206 taggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    ||||||||||||||||||||||||||| |||||||||    
T  11697 taggtttagggtttgcaaagtcattagcaatgttaac 11733  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 24454612 - 24454556
Alignment:
Q  167 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaa 223  Q
    |||||||||||| || ||||| |||||||||||| ||| |||||||||| |||||||    
T  24454612 gagatccaacggccctccttgtttggcgcctaaaaaatttaggtttaggatttgcaa 24454556  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 10328947 - 10328991
Alignment:
Q  198 aaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    ||||||| ||||||||||||||||||  ||||||| |||||||||    
T  10328947 aaacaatttaggtttagggtttgcaatttcattagcaatgttaac 10328991  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 13966 - 14019
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||||||| |||  || |||||||||| |||||||||||||||| |||||||||    
T  13966 ttggcgcccaaattatttaggtttaggatttgcaaagtcattagcaatgttaac 14019  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 12506511 - 12506458
Alignment:
Q  189 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||||||| |||  || |||||||||| |||||||||||||||| |||||||||    
T  12506511 ttggcgcccaaattatttaggtttaggatttgcaaagtcattagcaatgttaac 12506458  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 24260278 - 24260242
Alignment:
Q  206 taggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| |||||||||||||||||||||| |||||||||    
T  24260278 tagggttagggtttgcaaagtcattagcaatgttaac 24260242  T

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Target: scaffold0475 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 7536 - 7572
Alignment:
Q  206 taggtttagggtttgcaaagtcattagtaatgttaac 242  Q
    |||| |||||||||||||||||||||| |||||||||    
T  7536 tagggttagggtttgcaaagtcattagcaatgttaac 7572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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