View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_high_32 (Length: 241)
Name: NF3253_high_32
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 5220620 - 5220848
Alignment:
| Q |
1 |
gcaaccttcgcctccggcaccgataccaatacactcaaaacataagccgatttatccaccatattcgattcaaaatccgccatcaactcaaccaacacct |
100 |
Q |
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| T |
5220620 |
gcaaccttcgcctccggcaccgataccaatacactcaaaacataagccgatttatccaccatattcgattcaaaatccgccatcaactcaaccaacacct |
5220719 |
T |
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| Q |
101 |
tcattatccccgctttcaccgctctcatcttattctccttcacagaacacagagtatacagcgccgtagacgcgtccttcttcccgcgtattcctccact |
200 |
Q |
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| T |
5220720 |
tcattatccccgctttcaccgctctcatcttattctccttcacagaacacagagtatacagcgccgtagacgcgtccttcttcccgcgtattcctccact |
5220819 |
T |
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| Q |
201 |
tcctagaagattcaccaataacggaattg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5220820 |
tcctagaagattcaccaataacggaattg |
5220848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 229
Target Start/End: Complemental strand, 47470104 - 47469927
Alignment:
| Q |
52 |
ttatccaccatattcgattcaaaatccgccatcaactcaaccaacaccttcattatccccgctttcaccgctctcatcttattctccttcacagaacaca |
151 |
Q |
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| T |
47470104 |
ttatccaccatgttcgaatcaaaatccgccattaattcaactaaaggcttcattattccagcttttatcgctctgattttgttctcgttcaccgaacaca |
47470005 |
T |
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| Q |
152 |
gagtatacagcgccgtagacgcgtccttcttcccgcgtattcctccacttcctagaagattcaccaataacggaattg |
229 |
Q |
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| T |
47470004 |
gcgagtataaagccgttgacgcatcctttttcccgcggattcctccgttttctagaaggttcaccaatgccggaattg |
47469927 |
T |
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