View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_high_9 (Length: 437)
Name: NF3253_high_9
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 6262254 - 6262676
Alignment:
| Q |
1 |
tttggggacacataatgggaaacagaaatttgaatccaaattatgttgttcctcggtggataccacaatttgaatgcagaagtgaagctagaaccttggt |
100 |
Q |
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| T |
6262254 |
tttggggacacataatgggaaacagaaatttgaatccaaattatgttgttcctcggtggataccacaatttgaatgcagaagtgaagctagaaccttggt |
6262353 |
T |
|
| Q |
101 |
tgttctagatgatgtttggtcacaagcagttcttgaacagcttgtgtgtagaataccaggttgcaagtttgttgttgtttccaggttccaattcccaaca |
200 |
Q |
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| T |
6262354 |
tgttctagatgatgtttggtcacaagcagttcttgaacagcttgtgtgtagaataccaggttgcaagtttgttgttgtttccaggttccaattcccaaca |
6262453 |
T |
|
| Q |
201 |
atattctctgcaacttataaggttgaattgctcagtgaagaggatgctctgtcattattctgtcaccatgcttttggacagaaatcaatccctttaacag |
300 |
Q |
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| T |
6262454 |
atattctctgcaacttataaggttgaattgctcagtgaagaggatgctctgtcattattctgtcaccatgcttttggacagaaatcaatccctttaacag |
6262553 |
T |
|
| Q |
301 |
ctaatgagaatttggtcaaacaggtaatggaacttattcccagcacattgattaagtagtttacatttgtttggataaacagcttaattaatcgcataca |
400 |
Q |
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| T |
6262554 |
ctaatgagaatttggtcaaacaggtaatggaacttattcccagcacatcgattaagtaggttacatttgtttggataaacagcttaattaagcgcataca |
6262653 |
T |
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| Q |
401 |
acataatttcttatcatgtaagt |
423 |
Q |
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| T |
6262654 |
acataatttcttatcatgtaagt |
6262676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 330
Target Start/End: Original strand, 6271562 - 6271683
Alignment:
| Q |
209 |
tgcaacttataaggttgaattgctcagtgaagaggatgctctgtcattattctgtcaccatgcttttggacagaaatcaatccctttaacagctaatgag |
308 |
Q |
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|||||||||||| ||||||||| | |||| ||||| ||||| || ||||||||||| ||||| |||||||||||||| ||||| |||||||| || |
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| T |
6271562 |
tgcaacttataaagttgaattgttggacaaagatgatgcactgtctttgttctgtcaccacgctttcggacagaaatcaattcctttcgcagctaatcag |
6271661 |
T |
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| Q |
309 |
aatttggtcaaacaggtaatgg |
330 |
Q |
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||||| |||||||||||||||| |
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| T |
6271662 |
aatttagtcaaacaggtaatgg |
6271683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6271354 - 6271407
Alignment:
| Q |
1 |
tttggggacacataatgggaaacagaaatttgaatccaaattatgttgttcctc |
54 |
Q |
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|||||||||||||||||||||| ||| ||| ||| | |||||||||||||||| |
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| T |
6271354 |
tttggggacacataatgggaaatggaagtttcaataccaattatgttgttcctc |
6271407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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